CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031234.1-P	Field mustard	nucleus	94.56	99.82
CDY06387	Canola	nucleus	93.03	97.68
CDY57915	Canola	nucleus	88.61	92.38
AT3G20840.1	Thale cress	nucleus	88.78	90.94
CDY68782	Canola	nucleus	49.83	90.43
CDY29623	Canola	nucleus	72.79	76.16
CDY35571	Canola	nucleus	72.79	76.02
CDY72154	Canola	nucleus	42.35	75.68
CDY72251	Canola	nucleus	41.16	74.23
VIT_06s0004g01800.t01	Wine grape	nucleus	63.78	68.18
Solyc11g061750.1.1	Tomato	nucleus	62.41	66.97
PGSC0003DMT400035354	Potato	nucleus	62.07	66.24
KRH24688	Soybean	nucleus	62.24	66.18
KRH29690	Soybean	nucleus	62.41	61.37
CDX72655	Canola	endoplasmic reticulum, golgi	27.89	49.1
CDY33356	Canola	nucleus	15.65	47.92
CDY18032	Canola	nucleus	23.47	47.59
CDX78387	Canola	nucleus	31.97	46.77
CDY68823	Canola	nucleus	26.87	46.61
CDX97022	Canola	nucleus	31.97	45.97
CDY14577	Canola	nucleus	34.69	44.93
CDY16924	Canola	nucleus	27.38	42.59
CDY08784	Canola	nucleus	34.86	40.12
CDX82142	Canola	nucleus	31.12	40.04
GSMUA_Achr2P05880_001	Banana	nucleus	38.78	39.86
CDY49856	Canola	nucleus	30.95	39.82
CDY42263	Canola	nucleus	36.39	38.98
Os02t0614300-01	Rice	mitochondrion, nucleus	21.26	38.94
CDX85454	Canola	nucleus	37.59	38.84
CDY55941	Canola	nucleus	36.56	38.53
CDX88560	Canola	nucleus	20.24	38.51
CDY35066	Canola	nucleus	21.6	38.48
CDY47943	Canola	nucleus	36.22	38.38
CDY40102	Canola	nucleus	36.05	38.06
CDX69826	Canola	nucleus	36.22	38.04
CDX87360	Canola	nucleus	20.24	37.9
HORVU6Hr1G057060.3	Barley	nucleus	40.82	36.81
CDX85757	Canola	nucleus	36.05	36.61
Zm00001d017207_P001	Maize	nucleus	41.84	36.39
TraesCS6D01G205300.1	Wheat	nucleus	40.82	36.31
TraesCS6A01G229500.1	Wheat	nucleus	40.48	36.12
TraesCS6B01G252000.1	Wheat	nucleus	40.48	35.95
TraesCS2D01G357600.1	Wheat	nucleus	39.8	35.73
Os04t0504500-01	Rice	nucleus	39.97	35.71
KXG30667	Sorghum	nucleus	41.84	35.65
TraesCS2B01G378100.1	Wheat	nucleus	39.97	35.61
HORVU2Hr1G087310.1	Barley	nucleus	39.8	35.51
CDX75673	Canola	nucleus	32.14	34.49
CDX69324	Canola	nucleus	31.97	33.87
CDY50260	Canola	nucleus	31.8	33.39
CDY44027	Canola	nucleus	31.63	33.27
CDX73488	Canola	nucleus	22.45	31.96
CDX78230	Canola	plastid	22.45	31.81
CDX67595	Canola	plastid	21.77	30.77
CDY71263	Canola	nucleus	10.54	19.02

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078G3N0	UniProt:A0A078G3N0	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY19597	ProteinID:CDY19597	ProteinID:CDY19597.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00009262001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EDC6AF	SEG:seg	:	:	:

Description

BnaA05g20050DBnaA05g20050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3N0]

Coordinates

chrLK032098:-:362134..364750

Molecular Weight (calculated)

64813.7 Da

IEP (calculated)

6.551

GRAVY (calculated)

-0.636

Length

588 amino acids

Sequence
(BLAST)

001: MNSNNWLGFP LSPNHSSLPP HEYNIGLVSD HMDNPFQTQE WNMINPHGGG GEVPKVADFL GVSKPDENQS DHIVAYNDSG YYFHTTNSLM PSVQSNDVVV
101: ACDSNNPNDS YELQESAHNL QSLTLSMGTT GGNNAVAKAL PPEVTGDNTS GGALAVAETA TPRRALDTFG QRTSIYRGVT RHRWTGRYEA HLWDNTCRRE
201: GQSRKGRQGL IRLLLYTNHV LIYFSFFCVK LDSSLLYSWS GYDKEDKAAR SYDLAALKYW GPSTTTNFPI TNYEKELEEM KHMTRQEFVA AIRRKSSGFS
301: RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFEMNRYDVK AILESSTLPI GGGAAKRLKE AQALESSRKR
401: EAEMIALGSS FQYGSGSSSS RLQLQPYPLS IQQPLEPFLS LQNNDISHYN TNSHDTSSFN HNSYIQTQLH LHQQTNNYLQ QQSGQNSQQL YNAYLQSNPD
501: LLHGLVSTSI VDNNNNGGSS GSYNTAAFLG NHGIGIGTSS TVGSTGEFPA VKTDYDMASS DGNGGYGGWT GESVQGSNPG GVFTMWNE

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.