Factsheet for Os04t0504500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0176300-00	Rice	mitochondrion	23.25	90.0
TraesCS2D01G357600.1	Wheat	nucleus	72.19	72.52
HORVU2Hr1G087310.1	Barley	nucleus	72.19	72.08
TraesCS2B01G378100.1	Wheat	nucleus	72.04	71.82
Os02t0614300-01	Rice	mitochondrion, nucleus	33.13	67.91
Zm00001d017207_P001	Maize	nucleus	69.0	67.16
KXG30667	Sorghum	nucleus	70.06	66.81
Os01t0813300-00	Rice	nucleus	12.16	62.99
CDY68782	Canola	nucleus	25.68	52.16
GSMUA_Achr2P05880_001	Banana	nucleus	44.83	51.57
CDY72251	Canola	nucleus	24.77	50.0
CDY72154	Canola	nucleus	24.77	49.54
Os06t0657500-02	Rice	nucleus	32.37	45.42
KRH24688	Soybean	nucleus	37.54	44.67
VIT_06s0004g01800.t01	Wine grape	nucleus	37.08	44.36
Os11t0295900-01	Rice	nucleus	37.23	43.83
Solyc11g061750.1.1	Tomato	nucleus	36.02	43.25
PGSC0003DMT400035354	Potato	nucleus	36.02	43.01
Os03t0313100-01	Rice	extracellular, nucleus	28.12	42.92
Os07t0124700-01	Rice	nucleus	21.58	42.9
CDY06387	Canola	nucleus	36.17	42.5
Os01t0899800-01	Rice	nucleus	44.68	42.3
Bra031234.1-P	Field mustard	nucleus	35.56	42.01
CDY57915	Canola	nucleus	35.87	41.84
AT3G20840.1	Thale cress	nucleus	36.32	41.64
AT1G51190.1	Thale cress	nucleus	35.56	41.2
Bra018899.1-P	Field mustard	nucleus	34.95	41.14
Bra030451.1-P	Field mustard	nucleus	34.95	40.78
KRH29690	Soybean	nucleus	36.93	40.64
CDY29623	Canola	nucleus	34.65	40.57
CDY35571	Canola	nucleus	34.65	40.5
CDY19597	Canola	nucleus	35.71	39.97
Os04t0653600-01	Rice	nucleus	29.94	39.8
Os06t0145700-00	Rice	nucleus	18.84	38.51
Os09t0423800-01	Rice	nucleus	20.52	36.99
Os03t0232200-01	Rice	nucleus	33.74	34.58
Bra023921.1-P	Field mustard	nucleus	23.1	32.55
Os05t0536250-00	Rice	nucleus	20.97	32.02
Os08t0442400-01	Rice	nucleus	20.36	31.98
Os12t0126300-00	Rice	nucleus	21.12	31.17
Os03t0770700-01	Rice	plastid	12.46	24.19

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:9266143	UniProt:A0A0P0WCI6	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:BAS89963.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os04g0504500	EnsemblPlants:Os04t0504500-01
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0001C7E1DE	RefSeq:XP_015635553.1	SEG:seg	:	:

Description

PLETHORA 4Similar to protein BABY BOOM 1. (Os04t0504500-01)

Coordinates

chr4:+:25182303..25186566

Molecular Weight (calculated)

67670.7 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.425

Length

658 amino acids

Sequence
(BLAST)

001: MASADNWLGF SLSGQGNPQH HQNGSPSAAG DAAIDISGSG DFYGLPTPDA HHIGMAGEDA PYGVMDAFNR GTHETQDWAM RGLDYGGGSS DLSMLVGSSG
101: GGRRTVAGDG VGEAPKLENF LDGNSFSDVH GQAAGGYLYS GSAVGGAGGY SNGGCGGGTI ELSMIKTWLR SNQSQQQPSP PQHADQGMST DASASSYACS
201: DVLVGSCGGG GAGGTASSHG QGLALSMSTG SVAAAGGGGA VVAAESSSSE NKRVDSPGGA VDGAVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS
301: CRREGQSRKG RQVYLGGYDK EDKAARAYDL AALKYWGTTT TTNFPMSNYE KELEEMKHMT RQEYIAHLRR NSSGFSRGAS KYRGVTRHHQ HGRWQARIGR
401: VAGNKDIYLG TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILD SSTLPVGGAA RRLKEAEVAA AAAGGGVIVS HLADGGVGGY YYGCGPTIAF
501: GGGGQQPAPL AVHYPSYGQA SGWCKPEQDA VIAAGHCATD LQHLHLGSGG AAATHNFFQQ PASSSAVYGN GGGGGGNAFM MPMGAVVAAA DHGGQSSAYG
601: GGDESGRLVV GYDGVVDPYA AMRSAYELSQ GSSSSSVSVA KAANGYPDNW SSPFNGMG

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.