CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13720
KRH43737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	KRH13720	AT1G16490.1	21245844
AT1G51190.1	KRH43737	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29690	Soybean	nucleus	94.76	87.63
VIT_06s0004g01800.t01	Wine grape	nucleus	77.58	78.0
Solyc11g061750.1.1	Tomato	nucleus	70.52	71.17
CDY72154	Canola	nucleus	42.13	70.82
CDY72251	Canola	nucleus	41.59	70.55
PGSC0003DMT400035354	Potato	nucleus	70.16	70.42
AT1G51190.1	Thale cress	nucleus	69.8	67.96
CDY68782	Canola	nucleus	39.78	67.9
Bra030451.1-P	Field mustard	nucleus	68.9	67.55
Bra018899.1-P	Field mustard	nucleus	68.17	67.44
CDY29623	Canola	nucleus	68.54	67.44
CDY35571	Canola	nucleus	68.17	66.96
Bra031234.1-P	Field mustard	nucleus	66.0	65.53
CDY57915	Canola	nucleus	66.73	65.43
CDY06387	Canola	nucleus	66.18	65.36
AT3G20840.1	Thale cress	nucleus	67.45	64.98
CDY19597	Canola	nucleus	66.18	62.24
Bra023921.1-P	Field mustard	nucleus	50.27	59.53
KRG99477	Soybean	nucleus	35.62	44.87
KRH47304	Soybean	nucleus	23.51	44.83
KRH45549	Soybean	nucleus	35.62	44.07
KRH74476	Soybean	nucleus	38.7	41.96
KRH39470	Soybean	nucleus	38.7	41.8
KRH44591	Soybean	plastid	23.51	41.53
Os02t0614300-01	Rice	mitochondrion, nucleus	24.05	41.43
KRH06179	Soybean	nucleus	42.86	41.29
GSMUA_Achr2P05880_001	Banana	nucleus	42.68	41.26
KRH19032	Soybean	nucleus	38.7	40.53
KRH47597	Soybean	nucleus	42.31	40.41
HORVU6Hr1G057060.3	Barley	nucleus	45.75	38.8
TraesCS6D01G205300.1	Wheat	nucleus	45.75	38.28
TraesCS6A01G229500.1	Wheat	nucleus	45.57	38.24
TraesCS6B01G252000.1	Wheat	nucleus	45.39	37.92
KRH34229	Soybean	nucleus	39.42	37.91
Zm00001d017207_P001	Maize	nucleus	46.29	37.87
Os04t0504500-01	Rice	nucleus	44.67	37.54
KXG30667	Sorghum	nucleus	46.65	37.39
KRH55024	Soybean	plastid	23.69	37.32
KRH63091	Soybean	plastid	23.33	37.18
KRH02858	Soybean	nucleus	38.34	36.74
TraesCS2D01G357600.1	Wheat	nucleus	43.22	36.49
KRH72352	Soybean	nucleus	24.05	36.44
TraesCS2B01G378100.1	Wheat	nucleus	43.4	36.36
KRH40267	Soybean	nucleus	46.47	36.35
HORVU2Hr1G087310.1	Barley	nucleus	43.22	36.27
KRH02994	Soybean	nucleus	24.05	35.95
KRH40131	Soybean	nucleus	24.77	34.95
KRH01131	Soybean	nucleus	24.23	34.18
KRH13193	Soybean	nucleus	25.14	33.74
KRH15454	Soybean	nucleus	36.17	33.39
KRG88628	Soybean	nucleus	29.11	33.2
KRH00957	Soybean	nucleus	41.95	32.72
KRG99157	Soybean	nucleus	23.69	32.27
KRH44733	Soybean	nucleus	24.77	32.16
KRH45852	Soybean	nucleus	23.51	31.94
KRH77164	Soybean	nucleus	35.26	31.71
KRH28322	Soybean	nucleus	34.9	31.54
KRH58159	Soybean	nucleus	37.61	31.28
KRH52140	Soybean	nucleus	37.07	31.06
KRH04380	Soybean	nucleus	37.79	30.56
KRH61449	Soybean	nucleus	36.53	30.47

Protein Annotations

EntrezGene:100788471	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02007182	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_12G056300	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1LQI0	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH24688
ProteinID:KRH24688	ProteinID:KRH24688.1	ProteinID:KRH24689.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000152A5F1	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:4099867..4103287

Molecular Weight (calculated)

61373.6 Da

IEP (calculated)

6.621

GRAVY (calculated)

-0.734

Length

553 amino acids

Sequence
(BLAST)

001: MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENMD NPFQNHDWNL INTHSSNEIP KVADFLGVSK SENQSDLAAL NEIHSNDSDY LFTNNSLVPM
101: QNPVLDTPSN EYQENANSNL QSLTLSMGSG KDSTCETSGE NSTNTTVEVA PRRTLDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQVYL
201: GGYDKEEKAA RAYDLAALKY WGTSTTTNFP ISNYEKELDE MKHMTRQEFV AAIRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE
301: EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGGAAKRLK EAQALESSRK REEMIALGSS STFQYGTSAS SSRLHAYPLM QHHHQFEQPQ
401: PLLTLQNHDI SSSHFSHQQD PLHHQGYIQT QLQLHQQSGA SSYSFQNNAQ FYNGYLQNHP ALLQGMMNMG SSSSSSSVLE NNNSNNNNNN VGGFVGSGFG
501: MASNATAGNT VGTAEELGLV KVDYDMPAGG YGGWSAADSM QTSNGGVFTM WND

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.