CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39470	Soybean	nucleus	93.14	92.77
PGSC0003DMT400041758	Potato	nucleus	40.0	78.16
VIT_00s0772g00020.t01	Wine grape	nucleus	62.35	69.43
VIT_00s1291g00010.t01	Wine grape	nucleus	68.82	68.42
KRG99477	Soybean	nucleus	56.08	65.15
CDX97022	Canola	nucleus	50.98	63.57
KRH45549	Soybean	nucleus	55.49	63.31
Solyc11g010710.1.1	Tomato	nucleus	65.1	61.14
CDX78387	Canola	nucleus	47.06	59.7
Bra006065.1-P	Field mustard	nucleus	64.9	59.53
Bra024394.1-P	Field mustard	nucleus	52.35	59.47
CDY14577	Canola	nucleus	52.75	59.25
AT5G65510.2	Thale cress	nucleus	57.84	59.24
CDX69826	Canola	nucleus	64.51	58.75
Bra028584.1-P	Field mustard	nucleus	64.51	58.44
CDY40102	Canola	nucleus	63.53	58.17
Bra009026.1-P	Field mustard	nucleus	64.51	57.32
AT5G10510.3	Thale cress	nucleus	66.27	55.96
CDX85757	Canola	nucleus	63.33	55.79
CDY08784	Canola	nucleus	52.55	52.45
GSMUA_Achr1P24940_001	Banana	nucleus	33.33	50.45
HORVU4Hr1G052880.2	Barley	nucleus	19.41	46.48
TraesCS4B01G180600.1	Wheat	nucleus	33.92	46.13
TraesCS4D01G182100.1	Wheat	nucleus	33.92	46.01
TraesCS4A01G123800.1	Wheat	nucleus	33.53	45.24
KRH47304	Soybean	nucleus	25.29	44.48
KRH44591	Soybean	plastid	25.29	41.21
Os03t0313100-01	Rice	extracellular, nucleus	34.71	41.07
KXG39508	Sorghum	extracellular, nucleus	33.73	40.28
Zm00001d028919_P001	Maize	extracellular, nucleus	33.14	39.76
KRH24688	Soybean	nucleus	41.96	38.7
KRH19032	Soybean	nucleus	39.02	37.69
KRH63091	Soybean	plastid	25.1	36.89
KRH55024	Soybean	plastid	25.1	36.47
KRH06179	Soybean	nucleus	40.39	35.89
KRH34229	Soybean	nucleus	40.2	35.65
KRH29690	Soybean	nucleus	41.76	35.62
KRH72352	Soybean	nucleus	25.29	35.34
KRH47597	Soybean	nucleus	40.0	35.23
KRH02994	Soybean	nucleus	25.29	34.86
KRH02858	Soybean	nucleus	39.22	34.66
GSMUA_Achr11P...	Banana	nucleus	35.49	32.79
KRH13193	Soybean	nucleus	26.08	32.28
KRH01131	Soybean	nucleus	24.71	32.14
KRH40267	Soybean	nucleus	44.12	31.82
KRH45852	Soybean	nucleus	25.29	31.7
KRH15454	Soybean	nucleus	37.06	31.55
KRG88628	Soybean	nucleus	30.0	31.55
KRG99157	Soybean	nucleus	25.1	31.53
KRH40131	Soybean	nucleus	24.12	31.38
KRH44733	Soybean	nucleus	25.69	30.75
KRH77164	Soybean	nucleus	37.06	30.73
KRH61449	Soybean	nucleus	39.41	30.32
KRH52140	Soybean	nucleus	39.22	30.3
KRH58159	Soybean	nucleus	39.41	30.23
KRH28322	Soybean	nucleus	36.08	30.07
KRH04380	Soybean	nucleus	39.41	29.39
KRH00957	Soybean	nucleus	40.2	28.91

Protein Annotations

EntrezGene:100777168	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:ACUP02000036	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_01G022500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1J503	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH74476
ProteinID:KRH74476	ProteinID:KRH74476.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF33	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000152A5B5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:2246170..2251398

Molecular Weight (calculated)

55864.3 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.561

Length

510 amino acids

Sequence
(BLAST)

001: MARATNWLSF SLSPMEMLRT SEPQFLQYDA ASATSSHHYY LDNLYTNGWG NGSLKFEQNL NHSDVSFVES SSQSVGHVPP PPPKLEDFLG DSSAVMRYSD
101: SQTETQDSSL THIYDHHHHH HHHHGSTSYF GGDQQDLKAI TGFQAFSTNS GSEVDDSASI GKAQASEFGT HSIESSGNEF AAFSGGTTGT LSLAVALSSE
201: KAVVAAESNS SKKIVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTATTNFP VSNYSKEVEE
301: MKHVTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE EEAAEAYDIA AIKFRGANAV TNFEMNRYDV EAIMKSSLPV
401: GGAAKRLRLS LESEQKAPPV NSSSQQQNPQ CGNVSGSINF SAIHQPIASI PCGIPFDSTT AYYPHNLFQH FHPTNAGAAA SAVTSANATA LTALPASAAT
501: EFFIWPHQSY

Best Arabidopsis Sequence Match ( AT5G10510.6 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVYLGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT
401: FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ QQQLQLQSSP NHSSINFALC
501: PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.