Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97022 | Canola | nucleus | 80.35 | 78.97 |
| Bra006065.1-P | Field mustard | nucleus | 90.3 | 65.29 |
| CDY40102 | Canola | nucleus | 81.84 | 59.07 |
| CDX69826 | Canola | nucleus | 81.59 | 58.57 |
| CDX85757 | Canola | nucleus | 82.84 | 57.51 |
| AT5G10510.3 | Thale cress | nucleus | 83.33 | 55.46 |
| VIT_00s0772g00020.t01 | Wine grape | nucleus | 60.2 | 52.84 |
| CDY14577 | Canola | nucleus | 57.71 | 51.1 |
| GSMUA_Achr1P24940_001 | Banana | nucleus | 41.04 | 48.96 |
| CDY33356 | Canola | nucleus | 22.89 | 47.92 |
| VIT_00s1291g00010.t01 | Wine grape | nucleus | 60.45 | 47.37 |
| KRH39470 | Soybean | nucleus | 59.95 | 47.07 |
| KRH74476 | Soybean | nucleus | 59.7 | 47.06 |
| HORVU4Hr1G052880.2 | Barley | nucleus | 24.63 | 46.48 |
| CDX72655 | Canola | endoplasmic reticulum, golgi | 38.56 | 46.41 |
| Solyc05g051380.2.1 | Tomato | nucleus | 57.46 | 46.11 |
| CDY18032 | Canola | nucleus | 32.84 | 45.52 |
| CDY08784 | Canola | nucleus | 57.71 | 45.4 |
| TraesCS4D01G182100.1 | Wheat | nucleus | 41.04 | 43.88 |
| TraesCS4B01G180600.1 | Wheat | nucleus | 40.8 | 43.73 |
| TraesCS4A01G123800.1 | Wheat | nucleus | 40.55 | 43.12 |
| CDY68823 | Canola | nucleus | 35.82 | 42.48 |
| CDY68782 | Canola | nucleus | 33.08 | 41.05 |
| CDY72251 | Canola | nucleus | 32.34 | 39.88 |
| CDY72154 | Canola | nucleus | 32.59 | 39.82 |
| Os03t0313100-01 | Rice | extracellular, nucleus | 42.04 | 39.21 |
| KXG39508 | Sorghum | extracellular, nucleus | 41.54 | 39.11 |
| CDY16924 | Canola | nucleus | 36.32 | 38.62 |
| Zm00001d028919_P001 | Maize | extracellular, nucleus | 40.55 | 38.35 |
| CDX88560 | Canola | nucleus | 29.35 | 38.19 |
| CDY35066 | Canola | nucleus | 31.34 | 38.18 |
| CDX87360 | Canola | nucleus | 28.86 | 36.94 |
| CDY06387 | Canola | nucleus | 47.26 | 33.93 |
| CDX85454 | Canola | nucleus | 47.76 | 33.74 |
| CDY49856 | Canola | nucleus | 38.06 | 33.48 |
| CDX82142 | Canola | nucleus | 38.06 | 33.48 |
| CDY42263 | Canola | nucleus | 45.52 | 33.33 |
| CDY29623 | Canola | nucleus | 46.52 | 33.27 |
| CDY57915 | Canola | nucleus | 46.52 | 33.16 |
| CDY55941 | Canola | nucleus | 46.02 | 33.15 |
| CDY47943 | Canola | nucleus | 45.52 | 32.97 |
| CDY35571 | Canola | nucleus | 46.02 | 32.86 |
| CDY19597 | Canola | nucleus | 46.77 | 31.97 |
| PGSC0003DMT400037835 | Potato | nucleus | 39.8 | 30.65 |
| GSMUA_Achr11P... | Banana | nucleus | 41.54 | 30.25 |
| CDX73488 | Canola | nucleus | 30.85 | 30.02 |
| CDX78230 | Canola | plastid | 30.85 | 29.88 |
| CDX75673 | Canola | nucleus | 40.3 | 29.56 |
| CDX67595 | Canola | plastid | 30.35 | 29.33 |
| CDX69324 | Canola | nucleus | 39.8 | 28.83 |
| CDY50260 | Canola | nucleus | 39.3 | 28.21 |
| CDY44027 | Canola | nucleus | 39.05 | 28.09 |
| CDY71263 | Canola | nucleus | 10.95 | 13.5 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078CNP7 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX78387 | ProteinID:CDX78387 | ProteinID:CDX78387.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00129763001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF33 | SMART:SM00380 |
| SUPFAM:SSF54171 | TMHMM:TMhelix | UniParc:UPI0004EF37AD | SEG:seg | : | : |
Description
BnaA03g02990D
Coordinates
chrLK031815:+:554458..557807
Molecular Weight (calculated)
45433.0 Da
IEP (calculated)
9.127
GRAVY (calculated)
-0.674
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTHLAGEY LGHVVESSGQ ELGFIHGGAN TGGALSLGVN INNTNNHASN DNNKISEYNY REKPVVAVER SDSSNKKVAD TFGQRTSIYR GVTRHRWTGR
101: YEAHLWDNSC RREGQARKGR QDFHSFSFCL YLFKFSHFCF LTIMTVYLGG YDKEDKAARA YDLAALKYWN TAATTNFPIT NYSKELEEMK HMTKQEFIAS
201: LRRKSSGFSR GASMYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN FEMNRYDVEA IMKSALPIGG AAKRLKLSLE
301: SEQKPIIGHH QLHHFQQQHQ QLQSSPNDTA QSQMIPCGIP FEAASLYHHQ QQQQQQNFFQ HFPANAASDS TDSNNNSNVQ SSMGLMAPNA AAEFFLWPNQ
401: SY
101: YEAHLWDNSC RREGQARKGR QDFHSFSFCL YLFKFSHFCF LTIMTVYLGG YDKEDKAARA YDLAALKYWN TAATTNFPIT NYSKELEEMK HMTKQEFIAS
201: LRRKSSGFSR GASMYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN FEMNRYDVEA IMKSALPIGG AAKRLKLSLE
301: SEQKPIIGHH QLHHFQQQHQ QLQSSPNDTA QSQMIPCGIP FEAASLYHHQ QQQQQQNFFQ HFPANAASDS TDSNNNSNVQ SSMGLMAPNA AAEFFLWPNQ
401: SY
001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY
Arabidopsis Description
AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.