CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 24393360

gfp PMID: 24393360 doi

XL Wu, ZH Liu, ZH Hu, RZ Huang

Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Key Laboratory of Plant Metabolic Engineering of Zhejiang Province, Hangzhou, 310021, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007066.1-P	Field mustard	plastid	96.61	96.84
CDX78230	Canola	plastid	97.09	96.63
CDX67595	Canola	plastid	86.44	85.82
AT3G54320.1	Thale cress	plastid	82.57	77.85
Os01t0813300-00	Rice	nucleus	23.49	76.38
CDY33356	Canola	nucleus	27.36	58.85
GSMUA_Achr8P09350_001	Banana	plastid	44.31	50.55
CDX88560	Canola	nucleus	37.77	50.49
VIT_13s0047g00340.t01	Wine grape	plastid	44.79	49.87
CDX87360	Canola	nucleus	36.8	48.41
PGSC0003DMT400070735	Potato	nucleus	50.61	48.16
Solyc01g096860.1.1	Tomato	nucleus	51.09	47.63
Zm00001d005016_P005	Maize	plastid	45.76	47.49
EES09182	Sorghum	nucleus	47.46	46.67
CDY35066	Canola	nucleus	37.05	46.36
KRH13193	Soybean	nucleus	45.76	45.87
KRH44733	Soybean	nucleus	46.49	45.07
TraesCS5D01G150500.1	Wheat	plastid	44.55	43.09
TraesCS5A01G141700.1	Wheat	plastid	44.31	42.76
Os12t0126300-00	Rice	nucleus	46.0	42.6
HORVU5Hr1G045290.10	Barley	nucleus, plastid	44.55	42.2
GSMUA_Achr3P03630_001	Banana	plastid	41.89	41.79
TraesCS4B01G136400.1	Wheat	plastid	31.72	39.7
GSMUA_Achr3P09410_001	Banana	nucleus	34.14	39.39
Zm00001d052405_P002	Maize	plastid	40.44	38.39
CDX72655	Canola	endoplasmic reticulum, golgi	30.99	38.32
KXG33588	Sorghum	plastid	36.08	37.34
TraesCS4D01G131200.1	Wheat	plastid	31.48	36.62
TraesCS4A01G181300.1	Wheat	plastid	31.48	36.01
TraesCS3B01G368400.1	Wheat	plastid	33.41	35.84
TraesCS3D01G330400.1	Wheat	plastid	32.45	35.54
CDY18032	Canola	nucleus	24.7	35.17
CDY72251	Canola	nucleus	25.18	31.9
CDY72154	Canola	nucleus	25.18	31.61
Zm00001d043116_P002	Maize	nucleus	35.11	31.39
CDX78387	Canola	nucleus	30.02	30.85
CDY68782	Canola	nucleus	23.73	30.25
CDX97022	Canola	nucleus	29.06	29.34
CDY68823	Canola	nucleus	23.73	28.91
CDY14577	Canola	nucleus	30.27	27.53
CDX82142	Canola	nucleus	29.78	26.91
CDY49856	Canola	nucleus	29.54	26.7
CDY16924	Canola	nucleus	24.21	26.45
CDX75673	Canola	nucleus	33.9	25.55
CDX69324	Canola	nucleus	33.66	25.05
CDY42263	Canola	nucleus	32.45	24.41
CDY44027	Canola	nucleus	32.69	24.15
CDY47943	Canola	nucleus	32.45	24.14
CDY06387	Canola	nucleus	32.69	24.11
CDY50260	Canola	nucleus	32.69	24.11
CDY08784	Canola	nucleus	29.78	24.07
CDY29623	Canola	nucleus	31.72	23.31
CDY57915	Canola	nucleus	31.72	23.23
CDX69826	Canola	nucleus	31.48	23.21
CDY40102	Canola	nucleus	31.23	23.16
CDY35571	Canola	nucleus	31.48	23.09
CDX85454	Canola	nucleus	31.72	23.02
CDY55941	Canola	nucleus	30.51	22.58
CDY19597	Canola	nucleus	31.96	22.45
CDX85757	Canola	nucleus	31.23	22.28
CDY71263	Canola	nucleus	9.93	12.58

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078CEX6	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDX73488	ProteinID:CDX73488	ProteinID:CDX73488.1	ncoils:Coil	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00109003001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PFscan:PS51257	PANTHER:PTHR32467
PANTHER:PTHR32467:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001EDA821	SEG:seg	:

Description

BnaC08g25150D

Coordinates

chrLK031799:-:682258..686067

Molecular Weight (calculated)

46334.7 Da

IEP (calculated)

5.402

GRAVY (calculated)

-0.729

Length

413 amino acids

Sequence
(BLAST)

001: MKRPLTTSPS SSSSTSSSAC ILPTQSETPR PKRAKRAKKS SLRSDVKPQN PTSPASTRRS SIYRGVTRHR WTGRYEAHLW DKSSWNSIQN KKGKQVYLGA
101: YDSEEAAAHT YDLAALKYWG PNTILNFPVE TYTKELEEMQ RCTKEEYLAS LRRQSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYNTQEE
201: AAAAYDMAAI EYRGANAVTN FDISNYIDRL KKKGVFPFPV SQANHQEAVL AETKQEVEAK EEPTEEVKQC VEKEEAKEEK TEKKQQQEVE EAVITCCIDS
301: SESNELAWDF CMMDSGFAPF LTDSNLSSEN PIEYPELFNE MGFEDNIDFM FEEGKQDCLS LENLDCCDGV VVVGRESPTS LSSSPLSCLS TDSASSTTTT
401: ATTVTSVSCN YSV

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.