CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005016_P005	Maize	plastid	87.38	92.21
Zm00001d052405_P002	Maize	plastid	77.38	74.71
Os12t0126300-00	Rice	nucleus	64.29	60.54
TraesCS5D01G150500.1	Wheat	plastid	60.48	59.48
HORVU5Hr1G045290.10	Barley	nucleus, plastid	60.95	58.72
TraesCS5A01G141700.1	Wheat	plastid	59.76	58.64
GSMUA_Achr8P09350_001	Banana	plastid	48.81	56.63
CDX73488	Canola	nucleus	46.67	47.46
CDX78230	Canola	plastid	46.19	46.75
Bra007066.1-P	Field mustard	plastid	45.71	46.6
CDX67595	Canola	plastid	45.48	45.91
Bra003178.1-P	Field mustard	plastid	45.0	45.76
GSMUA_Achr3P03630_001	Banana	plastid	44.05	44.69
AT3G54320.1	Thale cress	plastid	45.95	44.06
KRH13193	Soybean	nucleus	42.86	43.69
Solyc01g096860.1.1	Tomato	nucleus	45.95	43.57
PGSC0003DMT400070735	Potato	nucleus	45.0	43.55
VIT_13s0047g00340.t01	Wine grape	plastid	37.86	42.86
KRH44733	Soybean	nucleus	42.14	41.55
OQU89519	Sorghum	plastid	38.1	40.51
KXG33588	Sorghum	plastid	34.76	36.59
OQU80549	Sorghum	nucleus	35.71	34.09
EES19874	Sorghum	nucleus	35.95	34.09
EER89186	Sorghum	nucleus	35.0	30.12
KXG39508	Sorghum	extracellular, nucleus	29.05	28.57
EER88761	Sorghum	nucleus	31.9	28.27
KXG27285	Sorghum	nucleus	30.71	26.43
OQU93137	Sorghum	nucleus	30.95	22.77
KXG39831	Sorghum	nucleus	32.14	21.88
EER93382	Sorghum	nucleus	32.62	21.14
KXG34322	Sorghum	nucleus	33.33	20.56
KXG33917	Sorghum	nucleus	31.9	19.06
KXG30667	Sorghum	nucleus	30.95	18.84

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	EntrezGene:8069258	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
UniProt:C5Y3Y9	InterPro:DNA-bd_dom_sf	EnsemblPlants:EES09182	ProteinID:EES09182	ProteinID:EES09182.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380	EnsemblPlantsGene:SORBI_3005G021000	SUPFAM:SSF54171
unigene:Sbi.21049	UniParc:UPI0001A866EC	RefSeq:XP_002450194.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:1937100..1943165

Molecular Weight (calculated)

46060.1 Da

IEP (calculated)

4.519

GRAVY (calculated)

-0.646

Length

420 amino acids

Sequence
(BLAST)

001: MDMERSQQQK SPTESPPPPS PSSSSSSVSA DTVLPPPGKR RRAATTAKAK AGAKPKRARK DAAAAADPPP PPAAAAAGKR SSVYRGVTRH RWTGRFEAHL
101: WDKHCLAALH NKKKGRQVYL GAYDSEEAAA RAYDLAALKY WGPETLLNFP VEDYSSEMPE MEGVSREEYL ASLRRRSSGF SRGVSKYRGV ARHHHNGRWE
201: ARIGRVFGNK YLYLGTFDTQ EEAAKAYDLA AIEYRGVNAV TNFDISCYLD HPLFLAQLQQ EPQVVPALNQ EAQPDQSETE TIAQESVSSE AKTPDDNAEP
301: DDNAEPDDIA EPLITVDDSI EESLWSPCMD YELDTMSRSN FGSSINLSEW FNDADFDSNI GCLFDGCSAV DEGGKDGVGL ADFSLLEDFS LFEAGDGQLK
401: DVLSDMEEGI QPPTMISVCN

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.