CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0176300-00	Rice	mitochondrion	29.07	97.65
Zm00001d027878_P002	Maize	nucleus	78.63	83.15
TraesCS4A01G011600.1	Wheat	nucleus	63.57	68.75
TraesCS4D01G291300.1	Wheat	nucleus	63.05	68.44
TraesCS4B01G292900.1	Wheat	nucleus	63.22	68.37
HORVU4Hr1G076200.4	Barley	nucleus	63.05	65.34
VIT_09s0002g01370.t01	Wine grape	nucleus	42.91	45.45
EER88761	Sorghum	nucleus	36.95	44.51
KXG27285	Sorghum	nucleus	36.95	43.24
KRH06179	Soybean	nucleus	42.73	42.51
KRH47597	Soybean	nucleus	42.73	42.14
GSMUA_Achr1P12410_001	Banana	nucleus	39.4	40.83
KXG39508	Sorghum	extracellular, nucleus	28.37	37.94
KXG39831	Sorghum	nucleus	35.73	33.06
KXG34322	Sorghum	nucleus	38.18	32.01
OQU89519	Sorghum	plastid	22.07	31.9
EER93382	Sorghum	nucleus	35.2	31.02
KXG30667	Sorghum	nucleus	37.48	31.01
EES09182	Sorghum	nucleus	22.77	30.95
KXG33917	Sorghum	nucleus	37.13	30.16
EES19874	Sorghum	nucleus	22.77	29.35
OQU80549	Sorghum	nucleus	22.42	29.09
KXG33588	Sorghum	plastid	19.79	28.32
EER89186	Sorghum	nucleus	21.89	25.61

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1Z5SB69	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:OQU93137	ProteinID:OQU93137	ProteinID:OQU93137.1	PFAM:PF00847
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	EnsemblPlantsGene:SORBI_3001G485200	SUPFAM:SSF54171
UniParc:UPI000B8B9BE9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:75593494..75598214

Molecular Weight (calculated)

60717.8 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.463

Length

571 amino acids

Sequence
(BLAST)

001: MDMNNGWLGF SLSPSAGRGG YGDGGASASG DGGDGSCSSP AAAASPVPLV AMPLQPDGSL HYTSAPDWRH GAAEANGPKL EDFMSVTCSS NNKRSSSSSS
101: FYDRCSHAEQ ANKYHEVHDL QPLSCGSYYH GSSGGGGNGI ALGINMNAPP CSGGGFPDHH HHHQFVSSHH GQYFLGAPLN ASPPGAVPMY SAGGGGVGGS
201: MSISGIKSWL REAMYVPPER PVAAAAALSL AVTDDVGAEP PQLLPAAPMP PVHRKPAQTF GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV
301: YLGGYDREEK AARAYDLAAL KYWGPSTHIN FPLSHYEKEL EEMKHMSRQE FIAHLRRNSS GFSRGASMYR GVTRCRAALC SPIFAPHLLP FPTPQNFCVP
401: LHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDISKYDVK RICASTHLIG GGDACRRSPT QPPDAPALAI DAAGADRSSD
501: APGGGDQAVS DNSDTSAGHR GAHLLHGLQY GHPMKLEAGE GSSWMAAATA AAARPVAGVH QLPVFALWND C

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.