Factsheet for TraesCS4A01G011600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0176300-00	Rice	mitochondrion	31.82	98.82
TraesCS4D01G291300.1	Wheat	nucleus	96.02	96.39
TraesCS4B01G292900.1	Wheat	nucleus	95.27	95.27
HORVU4Hr1G076200.4	Barley	nucleus	91.67	87.84
Zm00001d027878_P002	Maize	nucleus	68.56	67.04
OQU93137	Sorghum	nucleus	68.75	63.57
VIT_09s0002g01370.t01	Wine grape	nucleus	46.4	45.45
TraesCS7A01G495800.1	Wheat	nucleus	37.88	42.64
TraesCS2A01G505600.1	Wheat	nucleus	38.45	42.47
KRH06179	Soybean	nucleus	46.02	42.33
KRH47597	Soybean	nucleus	46.02	41.97
TraesCS4A01G123800.1	Wheat	nucleus	29.36	41.01
GSMUA_Achr1P12410_001	Banana	nucleus	42.61	40.83
TraesCS2A01G267600.2	Wheat	nucleus	39.77	34.94
TraesCS5A01G221600.1	Wheat	nucleus	25.0	33.33
TraesCS6A01G229500.1	Wheat	nucleus	40.91	32.78
TraesCS4A01G060400.1	Wheat	nucleus	38.83	32.7
TraesCS5A01G405400.1	Wheat	nucleus	38.45	32.27
TraesCS6A01G125700.1	Wheat	nucleus	20.64	31.23
TraesCS7A01G095100.1	Wheat	nucleus	24.05	31.13
TraesCS4A01G395400.1	Wheat	nucleus	23.86	30.81
TraesCS3A01G395500.1	Wheat	nucleus	40.72	30.63
TraesCS1A01G357800.1	Wheat	nucleus	23.48	30.02
TraesCS4A01G181300.1	Wheat	plastid	20.45	29.92
TraesCS5A01G141700.1	Wheat	plastid	24.24	29.91

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G011600	EnsemblPlants:TraesCS4A01G011600.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:6634636..6637708

Molecular Weight (calculated)

56373.4 Da

IEP (calculated)

7.767

GRAVY (calculated)

-0.537

Length

528 amino acids

Sequence
(BLAST)

001: MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY
101: DASHADQLKY HHHQDVHHAY PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM AAAPMYSSAA GFDGSANMSI
201: SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA
301: ARAYDLAALK YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI
401: AAIKFRGLSA VTNFDISKYD VKRICASSHL IGGDLACRRS PTRDAPALPS GVSVAVERPE AGASDNSSDA SDGHRGAHLL HGLQYAHAMK YEAGEGSNGG
501: GSWMAAAARP VAGVPSAHPL PVFALWND

Best Arabidopsis Sequence Match ( AT1G72570.1 )
(BLAST)

001: MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD
101: PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV
201: VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL
301: NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD
401: SDQAKHSPTS SGAGH

Arabidopsis Description

AIL1AP2-like ethylene-responsive transcription factor AIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.