Factsheet for TraesCS4A01G123800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G182100.1	Wheat	nucleus	95.5	96.01
TraesCS4B01G180600.1	Wheat	nucleus	95.24	96.0
HORVU4Hr1G052880.2	Barley	nucleus	52.65	93.43
Os03t0313100-01	Rice	extracellular, nucleus	68.78	60.32
Zm00001d028919_P001	Maize	extracellular, nucleus	62.96	56.0
KXG39508	Sorghum	extracellular, nucleus	62.7	55.5
PGSC0003DMT400041758	Potato	nucleus	34.39	49.81
GSMUA_Achr1P24940_001	Banana	nucleus	42.06	47.18
CDX78387	Canola	nucleus	43.12	40.55
KRG99477	Soybean	nucleus	45.24	38.95
CDX97022	Canola	nucleus	42.06	38.88
KRH45549	Soybean	nucleus	45.77	38.7
CDY14577	Canola	nucleus	43.92	36.56
Bra024394.1-P	Field mustard	nucleus	43.12	36.3
VIT_00s0772g00020.t01	Wine grape	nucleus	43.39	35.81
TraesCS7A01G495800.1	Wheat	nucleus	43.65	35.18
AT5G65510.2	Thale cress	nucleus	45.77	34.74
TraesCS2A01G505600.1	Wheat	nucleus	43.12	34.1
Solyc05g051380.2.1	Tomato	nucleus	44.71	33.73
KRH74476	Soybean	nucleus	45.24	33.53
VIT_00s1291g00010.t01	Wine grape	nucleus	45.24	33.33
KRH39470	Soybean	nucleus	44.97	33.2
Solyc11g010710.1.1	Tomato	nucleus	46.56	32.41
CDY08784	Canola	nucleus	43.65	32.29
TraesCS5A01G221600.1	Wheat	nucleus	32.8	31.31
Bra006065.1-P	Field mustard	nucleus	45.5	30.94
CDX69826	Canola	nucleus	45.24	30.54
Bra028584.1-P	Field mustard	nucleus	44.97	30.2
CDY40102	Canola	nucleus	44.44	30.16
TraesCS6A01G125700.1	Wheat	nucleus	27.51	29.8
Bra009026.1-P	Field mustard	nucleus	44.97	29.62
GSMUA_Achr11P...	Banana	nucleus	43.12	29.53
TraesCS4A01G011600.1	Wheat	nucleus	41.01	29.36
TraesCS5A01G141700.1	Wheat	plastid	32.8	28.97
TraesCS7A01G095100.1	Wheat	nucleus	31.22	28.92
TraesCS4A01G395400.1	Wheat	nucleus	31.22	28.85
CDX85757	Canola	nucleus	44.18	28.84
TraesCS1A01G357800.1	Wheat	nucleus	31.22	28.57
AT5G10510.3	Thale cress	nucleus	45.24	28.31
TraesCS4A01G181300.1	Wheat	plastid	26.98	28.25
TraesCS6A01G229500.1	Wheat	nucleus	47.62	27.31
TraesCS2A01G267600.2	Wheat	nucleus	42.59	26.79
TraesCS5A01G405400.1	Wheat	nucleus	43.39	26.07
PGSC0003DMT400037835	Potato	nucleus	35.71	25.86
TraesCS4A01G060400.1	Wheat	nucleus	42.86	25.84
TraesCS3A01G395500.1	Wheat	nucleus	45.5	24.5

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G123800	EnsemblPlants:TraesCS4A01G123800.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:156135502..156140680

Molecular Weight (calculated)

41230.3 Da

IEP (calculated)

7.323

GRAVY (calculated)

-0.419

Length

378 amino acids

Sequence
(BLAST)

001: MMSPPTNGSA SLPVTDLSDA VLFPFDGFSA DDFFATAPPP LPPTLGADPG RLLLASSRND VHASTDLAVA APVETTGSSS ALAAALPLTP SSGQRTSCYR
101: GVTRHRWTKR YEAHLWDNTC RREGQKRKGR QVYLGGYEKE DRAARAYDLA ALKYWGVNAT TNFPKENYIR ELEEMQNMSR HELVASLRRK SSGFSRGASV
201: YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAALKFRG DNAVTNFEPS RYNLEAIACS DLPVNGRRMS SHKPTAAAAP EAQGEITFVS
301: SAPPIPQQSC SDVQVPPYVL HGLLQLQASE PLHALPLSSY SFGEPSFYWP FGDVEQKVQL DSKVEVAGGI LQLANSAV

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.