CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78387	Canola	nucleus	78.97	80.35
CDX69826	Canola	nucleus	92.42	67.5
CDY40102	Canola	nucleus	83.62	61.4
CDX85757	Canola	nucleus	84.35	59.59
AT5G10510.3	Thale cress	nucleus	86.06	58.28
VIT_00s0772g00020.t01	Wine grape	nucleus	64.55	57.64
VIT_00s1291g00010.t01	Wine grape	nucleus	64.79	51.66
KRH74476	Soybean	nucleus	63.57	50.98
KRH39470	Soybean	nucleus	63.81	50.98
CDY14577	Canola	nucleus	54.52	49.12
GSMUA_Achr1P24940_001	Banana	nucleus	40.34	48.96
Solyc05g051380.2.1	Tomato	nucleus	59.17	48.3
CDY33356	Canola	nucleus	21.76	46.35
CDX72655	Canola	endoplasmic reticulum, golgi	36.92	45.21
HORVU4Hr1G052880.2	Barley	nucleus	23.47	45.07
CDY18032	Canola	nucleus	31.78	44.83
CDY08784	Canola	nucleus	55.01	44.03
TraesCS4D01G182100.1	Wheat	nucleus	39.12	42.55
TraesCS4B01G180600.1	Wheat	nucleus	38.88	42.4
TraesCS4A01G123800.1	Wheat	nucleus	38.88	42.06
CDY68782	Canola	nucleus	32.76	41.36
CDY68823	Canola	nucleus	33.99	41.0
Os03t0313100-01	Rice	extracellular, nucleus	42.05	39.91
CDY72154	Canola	nucleus	31.05	38.6
KXG39508	Sorghum	extracellular, nucleus	40.1	38.41
CDY72251	Canola	nucleus	30.56	38.34
Zm00001d028919_P001	Maize	extracellular, nucleus	39.36	37.88
CDX88560	Canola	nucleus	28.12	37.22
CDY16924	Canola	nucleus	34.23	37.04
CDY35066	Canola	nucleus	29.83	36.97
CDX87360	Canola	nucleus	28.12	36.62
CDY06387	Canola	nucleus	45.97	33.57
CDY57915	Canola	nucleus	46.21	33.51
CDX85454	Canola	nucleus	46.45	33.39
CDY55941	Canola	nucleus	45.48	33.33
CDY49856	Canola	nucleus	36.92	33.04
CDX82142	Canola	nucleus	36.92	33.04
CDY29623	Canola	nucleus	45.23	32.92
CDY35571	Canola	nucleus	44.99	32.68
CDY19597	Canola	nucleus	45.97	31.97
CDY42263	Canola	nucleus	42.54	31.69
CDY47943	Canola	nucleus	42.54	31.35
GSMUA_Achr11P...	Banana	nucleus	42.05	31.16
PGSC0003DMT400037835	Potato	nucleus	38.88	30.46
CDX73488	Canola	nucleus	29.34	29.06
CDX75673	Canola	nucleus	38.88	29.01
CDX78230	Canola	plastid	29.1	28.67
CDX69324	Canola	nucleus	38.39	28.29
CDX67595	Canola	plastid	28.61	28.12
CDY50260	Canola	nucleus	38.39	28.04
CDY44027	Canola	nucleus	38.14	27.91
CDY71263	Canola	nucleus	11.0	13.8

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078E7L7	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDX97022	ProteinID:CDX97022	ProteinID:CDX97022.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00103981001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EEE6D3	SEG:seg	:	:	:

Description

BnaC09g46030D

Coordinates

chrLK031897:+:240333..243425

Molecular Weight (calculated)

45013.4 Da

IEP (calculated)

9.185

GRAVY (calculated)

-0.543

Length

409 amino acids

Sequence
(BLAST)

001: MAGFQTAFST NSGSEVDDSA SIARTHLAGE YLGHVVESSG PELGFHGGAS TGGALSLGVN INNNANQRIS SDNNQIKRDS EKEKPVVAVE TSDCSNKKVA
101: DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQARKG RQAKLIIFAF FLHGPLAFTK INSGYDKEDK AARAYDLAAL KYWNAAATTN FPITNYSKEL
201: EEMKHMTKLE FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN AVTNFEMNRY DVEAIMKSAL
301: PIGGAAKRLK LSLESAASAE QKPNSSHNNS SINFALCPNS DVQSQMIPCG IPFDAAALYH HQQQQNFFQH FHAASDSTAS NNNNSNVQGS MGLMAPNAAE
401: FFLWPNQSY

Best Arabidopsis Sequence Match ( AT5G10510.3 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.