CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68823	Canola	nucleus	87.83	97.94
Bra013978.1-P	Field mustard	nucleus	90.21	58.89
AT5G17430.1	Thale cress	nucleus	77.51	50.17
CDX85454	Canola	nucleus	74.6	49.56
CDY55941	Canola	nucleus	69.31	46.95
CDX72655	Canola	endoplasmic reticulum, golgi	34.13	38.62
CDX78387	Canola	nucleus	38.62	36.32
CDY33356	Canola	nucleus	17.72	34.9
CDY18032	Canola	nucleus	26.72	34.83
CDX97022	Canola	nucleus	37.04	34.23
PGSC0003DMT400041881	Potato	nucleus	45.24	33.4
CDX88560	Canola	nucleus	26.72	32.69
CDX87360	Canola	nucleus	26.72	32.17
CDY35066	Canola	nucleus	26.45	30.3
CDY14577	Canola	nucleus	35.71	29.74
CDY68782	Canola	nucleus	25.4	29.63
CDY29623	Canola	nucleus	43.39	29.18
CDY72251	Canola	nucleus	25.13	29.14
CDY35571	Canola	nucleus	43.12	28.95
CDY72154	Canola	nucleus	25.13	28.88
CDY06387	Canola	nucleus	42.59	28.75
Os11t0295900-01	Rice	nucleus	42.06	28.44
CDY57915	Canola	nucleus	42.33	28.37
CDY49856	Canola	nucleus	33.6	27.79
CDX82142	Canola	nucleus	33.33	27.57
CDY19597	Canola	nucleus	42.59	27.38
CDY08784	Canola	nucleus	35.71	26.42
CDY40102	Canola	nucleus	38.89	26.39
CDY42263	Canola	nucleus	38.1	26.23
CDY47943	Canola	nucleus	38.36	26.13
KRH00957	Soybean	nucleus	48.94	26.09
Solyc11g008560.1.1	Tomato	nucleus	46.3	25.85
CDX69826	Canola	nucleus	38.1	25.71
CDX85757	Canola	nucleus	38.62	25.22
CDX73488	Canola	nucleus	26.45	24.21
CDX78230	Canola	plastid	26.19	23.86
CDX75673	Canola	nucleus	34.39	23.72
CDX69324	Canola	nucleus	34.66	23.6
CDX67595	Canola	plastid	25.93	23.56
CDY50260	Canola	nucleus	34.13	23.04
CDY44027	Canola	nucleus	33.86	22.9
CDY71263	Canola	nucleus	1.85	2.15

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078FV50	UniProt:A0A078FV50	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY16924	ProteinID:CDY16924	ProteinID:CDY16924.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00094839001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EDB16E	SEG:seg	:	:	:

Description

BnaC09g40510DBnaC09g40510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV50]

Coordinates

chrLK032068:+:368092..370042

Molecular Weight (calculated)

42654.4 Da

IEP (calculated)

7.228

GRAVY (calculated)

-0.690

Length

378 amino acids

Sequence
(BLAST)

001: MKKYFKKKKN FQIAFYNYSL FIEFFKIKFT DEARYDLIQL LSNHAGGYDK EEKAARAYDL AALKYWGTTT TTNFPMSEYE KEVEEMKHMT RQEYVASLRR
101: KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFGTQEEAAE AYDIAAIKFR GLTAVTNFDM NRYNVKAILE SPSLPIGSAA KRLKEANRPV
201: PSMMMISNNV SESENSASGW QNAAVQHHQG VDLSLLHQHQ ERYNGYYYNG GNLSSESARA CFKQEDDQHH FLSNTQSLMT NIDHQSSVSD DSVTVCGNVV
301: GYGGYQGFAA PVNCDAYAAS EFDYNARNHY YFAQQQQTQQ SPGGDFPAAM TNNVGSNMYY HGEGGGEVAP TFTVWNDN

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.