Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68823 | Canola | nucleus | 48.46 | 83.48 |
| Bra013978.1-P | Field mustard | nucleus | 82.36 | 83.07 |
| CDX85454 | Canola | nucleus | 79.45 | 81.55 |
| Bra023617.1-P | Field mustard | nucleus | 73.29 | 79.85 |
| CDY55941 | Canola | nucleus | 75.0 | 78.49 |
| CDY16924 | Canola | nucleus | 50.17 | 77.51 |
| AT1G72570.1 | Thale cress | nucleus | 32.02 | 45.06 |
| PGSC0003DMT400041881 | Potato | nucleus | 38.53 | 43.95 |
| AT1G79700.2 | Thale cress | nucleus | 22.6 | 42.17 |
| Solyc11g008560.1.1 | Tomato | nucleus | 47.77 | 41.21 |
| AT5G65510.2 | Thale cress | nucleus | 35.1 | 41.16 |
| Os11t0295900-01 | Rice | nucleus | 39.38 | 41.14 |
| AT1G51190.1 | Thale cress | nucleus | 39.9 | 41.02 |
| AT1G16060.1 | Thale cress | nucleus | 23.63 | 40.0 |
| AT3G20840.1 | Thale cress | nucleus | 38.01 | 38.68 |
| KRH00957 | Soybean | nucleus | 46.92 | 38.65 |
| AT5G57390.1 | Thale cress | nucleus | 35.79 | 37.46 |
| AT5G10510.3 | Thale cress | nucleus | 37.84 | 36.59 |
| AT4G37750.1 | Thale cress | nucleus | 34.08 | 35.86 |
| AT3G54320.1 | Thale cress | plastid | 23.8 | 31.74 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | EntrezGene:831609 | UniProt:A7L9U1 | ProteinID:AAM33803.1 | ProteinID:AED92425.1 |
| InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G17430 | EnsemblPlantsGene:AT5G17430 | RefSeq:AT5G17430 |
| TAIR:AT5G17430 | RefSeq:AT5G17430-TAIR-G | EnsemblPlants:AT5G17430.1 | TAIR:AT5G17430.1 | EMBL:AY585684 | Symbol:BBM |
| ProteinID:CAC01738.1 | InterPro:DNA-bd_dom_sf | EMBL:EF687843 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_197245.2 | PFAM:PF00847 |
| PO:PO:0000016 | PO:PO:0000025 | PO:PO:0000084 | PO:PO:0009009 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR32467 | PANTHER:PTHR32467:SF72 | UniProt:Q6PQQ4 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000058E2EE |
| SEG:seg | : | : | : | : | : |
Description
BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
Coordinates
chr5:-:5742393..5745748
Molecular Weight (calculated)
64548.7 Da
IEP (calculated)
6.434
GRAVY (calculated)
-0.776
Length
584 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.