Factsheet for Bra023617.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85454	Canola	nucleus	98.13	92.44
Bra013978.1-P	Field mustard	nucleus	81.53	75.47
AT5G17430.1	Thale cress	nucleus	79.85	73.29
Bra024394.1-P	Field mustard	nucleus	32.09	38.31
PGSC0003DMT400041881	Potato	nucleus	34.89	36.52
Bra008040.1-P	Field mustard	nucleus	29.85	36.36
KRH00957	Soybean	nucleus	47.76	36.11
Bra018899.1-P	Field mustard	nucleus	37.31	35.78
Os11t0295900-01	Rice	nucleus	36.38	34.88
Bra030451.1-P	Field mustard	nucleus	36.57	34.75
Solyc11g008560.1.1	Tomato	nucleus	43.66	34.56
Bra031234.1-P	Field mustard	nucleus	35.63	34.29
Bra035137.1-P	Field mustard	nucleus	19.59	34.09
Bra006065.1-P	Field mustard	nucleus	35.26	33.99
Bra028584.1-P	Field mustard	nucleus	35.45	33.75
Bra026082.1-P	Field mustard	nucleus	20.15	32.73
Bra009026.1-P	Field mustard	nucleus	34.89	32.58
Bra020444.1-P	Field mustard	nucleus	32.65	31.31
Bra011782.1-P	Field mustard	nucleus	30.97	30.46
Bra017852.1-P	Field mustard	nucleus	31.16	30.04
Bra010610.1-P	Field mustard	nucleus	30.78	29.84
Bra007066.1-P	Field mustard	plastid	19.4	25.24
Bra003178.1-P	Field mustard	plastid	19.4	25.18
Bra023921.1-P	Field mustard	nucleus	20.34	23.34

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra023617
EnsemblPlants:Bra023617.1	EnsemblPlants:Bra023617.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4E4B4	PFAM:PF00847
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543127
SEG:seg	:	:	:	:	:

Description

AT5G17430 (E=1e-138) BBM | BBM (BABY BOOM); DNA binding / transcription factor

Coordinates

chrA02:-:4210263..4213370

Molecular Weight (calculated)

58408.6 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.699

Length

536 amino acids

Sequence
(BLAST)

001: MNNNWLGFSL SPSDQNIHRT GVVDSSTATT AVDVTGEYCY DMTAASDESS AVQTSFPSPF GVVLDAFTRD NNSHSRDWDI NGGACNNIHS NDQNEPKLEN
101: FFGRTTTIYN NSENGGDGNG GCGGGDGAGG SLGLSMIKTW LTNQPVSNVD HQENNGNAAR GLSLSMNSST TCDSNKYNNR NNVVQEKTNV DSVDATPKKT
201: IESFGQRTSI YRGGYDKEEK AARAYDLAAL KYWGTTTTTN FPITEYEKEV EDMNHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG
301: NKDLYLGTFG TQEEAAEAYD IAAIKFRGLT AVTNFEMSRY NVKAILESPS LPIGSSAKRL KEVNHPVPSM MINNNISEGE NDASGWQNAA VQHHHGIDLS
401: LLQQHQERYN NYYNGGSARA YFKEEEDQHH FLSNSPSLMA NIDQHSSASG DMVTVYGNVD GYGSHQALAT PVGTSLNCDA LAAAEIAYDA RNHYYFAQQQ
501: QGGGGFPVGI SNNVGSNMYF NGEGGGEGAF TVWNNT

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.