Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra007146.1-P | |
| Bra014771.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16060.1 | Bra007146.1-P | AT3G55150.1 | 21798944 |
| AT1G16060.1 | Bra014771.1-P | AT3G55150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35066 | Canola | nucleus | 99.39 | 99.39 |
| AT1G16060.1 | Thale cress | nucleus | 86.67 | 82.9 |
| Bra035137.1-P | Field mustard | nucleus | 69.39 | 74.35 |
| KRH47304 | Soybean | nucleus | 59.39 | 67.59 |
| KRH44591 | Soybean | plastid | 59.7 | 62.94 |
| Solyc06g068570.2.1 | Tomato | nucleus | 58.79 | 61.59 |
| VIT_09s0018g01650.t01 | Wine grape | plastid | 63.33 | 57.89 |
| Solyc03g117720.2.1 | Tomato | nucleus, plastid | 62.42 | 55.53 |
| Os09t0423800-01 | Rice | nucleus | 57.27 | 51.78 |
| GSMUA_Achr5P04670_001 | Banana | nucleus | 55.76 | 51.11 |
| TraesCS6B01G153800.1 | Wheat | nucleus | 50.3 | 49.26 |
| TraesCS5D01G229400.1 | Wheat | nucleus | 57.58 | 47.98 |
| TraesCS5B01G220400.2 | Wheat | nucleus | 57.58 | 47.86 |
| TraesCS5A01G221600.1 | Wheat | nucleus | 57.27 | 47.73 |
| Zm00001d020540_P002 | Maize | plastid | 58.79 | 47.2 |
| Os08t0442400-01 | Rice | nucleus | 59.7 | 47.02 |
| OQU89519 | Sorghum | plastid | 56.06 | 46.84 |
| TraesCS6A01G125700.1 | Wheat | nucleus | 47.58 | 44.99 |
| Zm00001d032144_P001 | Maize | nucleus | 49.39 | 40.25 |
| OQU80549 | Sorghum | nucleus | 52.42 | 39.32 |
| Bra003178.1-P | Field mustard | plastid | 46.67 | 37.29 |
| Bra007066.1-P | Field mustard | plastid | 45.76 | 36.65 |
| Bra024394.1-P | Field mustard | nucleus | 38.48 | 28.29 |
| Bra008040.1-P | Field mustard | nucleus | 34.85 | 26.14 |
| Bra020444.1-P | Field mustard | nucleus | 40.61 | 23.97 |
| Bra011782.1-P | Field mustard | nucleus | 39.39 | 23.85 |
| Bra017852.1-P | Field mustard | nucleus | 39.09 | 23.2 |
| Bra006065.1-P | Field mustard | nucleus | 39.09 | 23.2 |
| Bra013978.1-P | Field mustard | nucleus | 40.61 | 23.14 |
| Bra018899.1-P | Field mustard | nucleus | 39.09 | 23.08 |
| Bra028584.1-P | Field mustard | nucleus | 39.09 | 22.91 |
| Bra030451.1-P | Field mustard | nucleus | 38.79 | 22.7 |
| Bra031234.1-P | Field mustard | nucleus | 38.18 | 22.62 |
| Bra009026.1-P | Field mustard | nucleus | 39.09 | 22.47 |
| Bra010610.1-P | Field mustard | nucleus | 35.45 | 21.16 |
| Bra023617.1-P | Field mustard | nucleus | 32.73 | 20.15 |
| Bra023921.1-P | Field mustard | nucleus | 19.7 | 13.92 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra026082 |
| EnsemblPlants:Bra026082.1 | EnsemblPlants:Bra026082.1-P | InterPro:DNA-bd_dom_sf | GO:GO:0000981 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0006629 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010187 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0045723 | GO:GO:1901959 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:M4EBC3 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 |
| PANTHER:PTHR32467:SF20 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000253F17E | SEG:seg | : |
Description
AT1G16060 (E=1e-153) | ovule development protein, putative
Coordinates
chrA06:+:6213617..6216268
Molecular Weight (calculated)
37374.9 Da
IEP (calculated)
6.414
GRAVY (calculated)
-0.974
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEISRRSKK TSVEDKTTDE SSASSVVVKT KRKRQSQPRD APPQRSSMYR GVTRHRWTGR YEAHLWDKNS WNETQSKKGR QVYLGAYDEE DAAARAYDLA
101: ALKYWGRDTV LNFPQCNYEE DLKEMDSQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDVAAIEYRG
201: LNAVTNFDIN RYLKLPAPES PIDAANIPHS DPSPFINPDH ESAPSQSQSS SDENDDRKTK FLKSSPCSNA EEVVGPSTPP EIAPSRRSFP DDIQTYFGCQ
301: DSGKVEDDDV IFGGLDSFLT PDFYSELNDC
101: ALKYWGRDTV LNFPQCNYEE DLKEMDSQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDVAAIEYRG
201: LNAVTNFDIN RYLKLPAPES PIDAANIPHS DPSPFINPDH ESAPSQSQSS SDENDDRKTK FLKSSPCSNA EEVVGPSTPP EIAPSRRSFP DDIQTYFGCQ
301: DSGKVEDDDV IFGGLDSFLT PDFYSELNDC
001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
Arabidopsis Description
ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.