Factsheet for Bra031234.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06387	Canola	nucleus	98.03	97.5
CDY19597	Canola	nucleus	99.82	94.56
AT3G20840.1	Thale cress	nucleus	93.54	90.77
Bra023921.1-P	Field mustard	nucleus	75.94	90.58
Bra018899.1-P	Field mustard	nucleus	77.38	77.1
Bra030451.1-P	Field mustard	nucleus	76.66	75.71
VIT_06s0004g01800.t01	Wine grape	nucleus	67.15	68.0
Solyc11g061750.1.1	Tomato	nucleus	65.71	66.79
PGSC0003DMT400035354	Potato	nucleus	65.35	66.06
KRH24688	Soybean	nucleus	65.53	66.0
KRH29690	Soybean	nucleus	65.71	61.2
Bra024394.1-P	Field mustard	nucleus	36.8	45.66
Bra008040.1-P	Field mustard	nucleus	32.85	41.59
GSMUA_Achr2P05880_001	Banana	nucleus	40.75	39.69
Bra006065.1-P	Field mustard	nucleus	39.14	39.21
Bra013978.1-P	Field mustard	nucleus	40.22	38.69
Bra035137.1-P	Field mustard	nucleus	21.36	38.64
Os02t0614300-01	Rice	mitochondrion, nucleus	22.26	38.63
Bra028584.1-P	Field mustard	nucleus	38.6	38.19
Bra026082.1-P	Field mustard	nucleus	22.62	38.18
Bra020444.1-P	Field mustard	nucleus	37.88	37.75
Bra009026.1-P	Field mustard	nucleus	38.42	37.28
HORVU6Hr1G057060.3	Barley	nucleus	42.91	36.66
Zm00001d017207_P001	Maize	nucleus	43.99	36.24
TraesCS6D01G205300.1	Wheat	nucleus	42.91	36.16
TraesCS6A01G229500.1	Wheat	nucleus	42.55	35.96
TraesCS6B01G252000.1	Wheat	nucleus	42.55	35.8
Bra023617.1-P	Field mustard	nucleus	34.29	35.63
TraesCS2D01G357600.1	Wheat	nucleus	41.83	35.57
Os04t0504500-01	Rice	nucleus	42.01	35.56
KXG30667	Sorghum	nucleus	43.99	35.51
TraesCS2B01G378100.1	Wheat	nucleus	42.01	35.45
HORVU2Hr1G087310.1	Barley	nucleus	41.83	35.36
Bra011782.1-P	Field mustard	nucleus	33.57	34.31
Bra017852.1-P	Field mustard	nucleus	33.93	33.99
Bra010610.1-P	Field mustard	nucleus	32.14	32.37
Bra007066.1-P	Field mustard	plastid	23.7	32.04
Bra003178.1-P	Field mustard	plastid	23.16	31.23

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra031234
EnsemblPlants:Bra031234.1	EnsemblPlants:Bra031234.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4ER11	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025479F7	SEG:seg	:	:	:	:

Description

AT3G20840 (E=6e-252) PLT1 | PLT1 (PLETHORA 1); transcription factor

Coordinates

chrA05:-:16784858..16787473

Molecular Weight (calculated)

61049.0 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.721

Length

557 amino acids

Sequence
(BLAST)

001: MNSNNWLGFP LSPNHSSLPP HEYNIGLVSD HMDNPFQTQE WNMINPHGGG GEVPKVADFL GVSKPDENQS DHIVAYNDSG YYFHTTNSLM PSVQSNDVVV
101: ACDSNNPNDS YELQESAHNL QSLTLSMGTT GGNNAVAKAL PPEVTGDNTS GGALAVAETA TPRRALDTFG QRTSIYRGVT RHRWTGRYEA HLWDNTCRRE
201: GQSRKGRQGG YDKEDKAARS YDLAALKYWG PSTTTNFPIT NYEKELEEMK HMTRQEFVAA IRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL
301: YLGTFSTEEE AAEAYDIAAI TFRGLNAVTN FEMNRYDVKA ILESSTLPIG GGAAKRLKEA QALESSRKRE AEMIALGSSF QYGSGSSSSR LQLQPYPLSI
401: QQPLEPFLSL QNNDISHYNT NSHDTSSFNH NSYIQTQLHL HQQTNNYLQQ QSGQNSQQLY NAYLQSNPDL LHGLVSTSIV DNNNNGGSSG SYNTAAFLGN
501: HGIGIGTSST VGSTGEFPAV KTDYDMASSD GNGGYGGWTG ESVQGSNPGG VFTMWNE

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.