Factsheet for HORVU2Hr1G087310.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G357600.1	Wheat	nucleus	98.18	98.78
TraesCS2B01G378100.1	Wheat	nucleus	97.88	97.73
Os04t0504500-01	Rice	nucleus	72.08	72.19
Os02t0614300-01	Rice	mitochondrion, nucleus	32.63	66.98
Zm00001d017207_P001	Maize	nucleus	67.98	66.27
KXG30667	Sorghum	nucleus	68.44	65.36
HORVU6Hr1G057060.3	Barley	nucleus	64.34	65.03
CDY68782	Canola	nucleus	25.19	51.23
GSMUA_Achr2P05880_001	Banana	nucleus	44.16	50.87
CDY72251	Canola	nucleus	24.13	48.77
CDY72154	Canola	nucleus	23.98	48.02
HORVU4Hr1G052880.2	Barley	nucleus	15.48	47.89
HORVU7Hr1G111060.4	Barley	nucleus	31.26	44.11
VIT_06s0004g01800.t01	Wine grape	nucleus	36.42	43.64
Solyc11g061750.1.1	Tomato	nucleus	36.12	43.43
KRH24688	Soybean	nucleus	36.27	43.22
PGSC0003DMT400035354	Potato	nucleus	36.12	43.19
CDY06387	Canola	nucleus	35.81	42.14
CDY57915	Canola	nucleus	35.81	41.84
Bra031234.1-P	Field mustard	nucleus	35.36	41.83
AT3G20840.1	Thale cress	nucleus	36.12	41.46
HORVU3Hr1G089160.2	Barley	nucleus	41.43	41.36
AT1G51190.1	Thale cress	nucleus	35.2	40.85
CDY35571	Canola	nucleus	34.75	40.67
Bra030451.1-P	Field mustard	nucleus	34.75	40.6
Bra018899.1-P	Field mustard	nucleus	34.29	40.43
CDY29623	Canola	nucleus	34.45	40.39
CDY19597	Canola	nucleus	35.51	39.8
KRH29690	Soybean	nucleus	35.96	39.63
HORVU4Hr1G076200.4	Barley	nucleus	31.11	37.21
HORVU5Hr1G098450.2	Barley	nucleus	32.47	33.91
HORVU4Hr1G065990.2	Barley	nucleus	32.47	33.75
HORVU1Hr1G080350.3	Barley	nucleus	20.49	33.33
Bra023921.1-P	Field mustard	nucleus	23.37	32.98
HORVU5Hr1G045290.10	Barley	nucleus, plastid	20.64	31.19

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G087310
EnsemblPlants:HORVU2Hr1G087310.1	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0YMA1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002962AAC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:627136997..627141298

Molecular Weight (calculated)

69800.3 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.556

Length

659 amino acids

Sequence
(BLAST)

001: MASANNWLGF SLSGQGNHPQ PHQNGSPAAA AIDVSGAGDF YGLQAQTAPD AHLGMSGLRA DANYGVMDAF NGGNQETQDW AMRGLDYHGG SSELSMLVGS
101: SGGRMTVDDG EAPKLEDFLG GNSFSDVQDH AGSYLFSSGS AMGSGAAAGS HGVQGRGGST IELSMIKTWL RNDNNQAQHD QEMSADASAT SYACSGAPGS
201: TGNGVGVANS RGQGLALSMS MGSNSHPQMP VVPAAVGTES TSSENKRVDS PSAGTADAVQ RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ
301: TRKGKQVYLG GYDKEDKAAR AYDLAALKYW GTTTTTNIPI STYEKEIEEM KHMTRQEYIA YLRRNSSGFS RGASKYRGVT RHHQQGRWQA RIGRVAGNKD
401: LYLGTFTTEE EAAEAYDIAA IKFRGLNAVT NFEMSRYDVK SILEGSTLPV GGAARRLKEA AELAEAGVWR AEDGSIVSHL QADAMAGYHH GWPTSIAFGS
501: HQQQQSAAQL ALHYPYGVGG QARGWCKPEQ DAVIEAAHGG QDLQELHLGS GGSTHNFFQP ASRTAVYGNG GGGAWYQGLG GNAYMMPVGT VVDADQGHSG
601: STATTEEGRL VGYGAEAGVD PYAAMRRAYE LSQGSSSVSV AKVADGYSNN WSSPFNGMG

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.