Factsheet for HORVU5Hr1G045290.10

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G150500.1	Wheat	plastid	91.51	93.44
TraesCS5A01G141700.1	Wheat	plastid	89.91	91.59
Zm00001d005016_P005	Maize	plastid	57.57	63.07
Os12t0126300-00	Rice	nucleus	63.07	61.66
EES09182	Sorghum	nucleus	58.72	60.95
GSMUA_Achr8P09350_001	Banana	plastid	44.5	53.59
Zm00001d052405_P002	Maize	plastid	51.83	51.95
CDX73488	Canola	nucleus	42.2	44.55
CDX78230	Canola	plastid	41.74	43.86
CDX67595	Canola	plastid	41.74	43.75
Bra007066.1-P	Field mustard	plastid	41.28	43.69
Bra003178.1-P	Field mustard	plastid	41.28	43.58
GSMUA_Achr3P03630_001	Banana	plastid	41.28	43.48
VIT_13s0047g00340.t01	Wine grape	plastid	36.7	43.13
KRH13193	Soybean	nucleus	40.6	42.96
AT3G54320.1	Thale cress	plastid	43.12	42.92
PGSC0003DMT400070735	Potato	nucleus	41.74	41.94
Solyc01g096860.1.1	Tomato	nucleus	42.43	41.76
KRH44733	Soybean	nucleus	40.37	41.31
HORVU1Hr1G080350.3	Barley	nucleus	33.49	36.05
HORVU4Hr1G052880.2	Barley	nucleus	16.05	32.86
HORVU7Hr1G111060.4	Barley	nucleus	30.5	28.48
HORVU4Hr1G076200.4	Barley	nucleus	28.9	22.87
HORVU4Hr1G065990.2	Barley	nucleus	30.73	21.14
HORVU6Hr1G057060.3	Barley	nucleus	31.42	21.01
HORVU2Hr1G087310.1	Barley	nucleus	31.19	20.64
HORVU5Hr1G098450.2	Barley	nucleus	29.13	20.13
HORVU3Hr1G089160.2	Barley	nucleus	30.05	19.85

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A287R0N1	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975	GO:GO:0006091
GO:GO:0006109	GO:GO:0006110	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006629
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009056	GO:GO:0009058
GO:GO:0009744	GO:GO:0009987	GO:GO:0019432	GO:GO:1901959	EnsemblPlantsGene:HORVU5Hr1G045290	EnsemblPlants:HORVU5Hr1G045290.10
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000B4683A4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:350384131..350388727

Molecular Weight (calculated)

47749.2 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.712

Length

436 amino acids

Sequence
(BLAST)

001: PTLPRPTTID TEIMKRSPPP QPSPSSSPAC SPSPSSPSSS DSSSIAIPRK RARTQKAGSA KAKAAPKRAK KDSGRSTKDS DASANGAAAS GKRSSIYRGV
101: TRHRWTGRFE AHLWDKNCFT SIQNKKKGRQ VYLGAYDTEE AAARAYDLAA LKYWGPETTL NFTVDEYAKE RSEMEAVSRE EYLAALRRRS SGFSRGVSKY
201: RGVARHHHNG RWEARIGRVL GNKYLYLGTF DTQEEAARAY DLAAIEYRGA NAVTNFDISR YLDQPQLLAQ LEQGPQVVPA LQEELQHDHQ SDNAVQELNS
301: GEAQKPGSVS EPIAVDDTDN TGDIGAPLVF DSGVEENLWS PCMDYDVDPI FGPNISSSMN LSEWFNDPAF ESNIGYMFEG CSDVDDCSTR HGAGLSALGF
401: LKEGDDKLKD VSDMEAEITP QANDVSCPPK MITVCN

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.