Factsheet for TraesCS5D01G150500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G141700.1	Wheat	plastid	95.32	95.09
HORVU5Hr1G045290.10	Barley	nucleus, plastid	93.44	91.51
Os12t0126300-00	Rice	nucleus	65.81	63.0
Zm00001d005016_P005	Maize	plastid	57.85	62.06
EES09182	Sorghum	nucleus	59.48	60.48
GSMUA_Achr8P09350_001	Banana	plastid	46.6	54.97
Zm00001d052405_P002	Maize	plastid	51.76	50.8
CDX73488	Canola	nucleus	43.09	44.55
GSMUA_Achr3P03630_001	Banana	plastid	43.09	44.44
CDX78230	Canola	plastid	42.39	43.61
CDX67595	Canola	plastid	42.39	43.51
Bra007066.1-P	Field mustard	plastid	41.92	43.45
KRH13193	Soybean	nucleus	41.92	43.45
Bra003178.1-P	Field mustard	plastid	41.92	43.34
VIT_13s0047g00340.t01	Wine grape	plastid	37.47	43.13
PGSC0003DMT400070735	Potato	nucleus	43.09	42.4
AT3G54320.1	Thale cress	plastid	43.33	42.24
Solyc01g096860.1.1	Tomato	nucleus	43.79	42.21
KRH44733	Soybean	nucleus	41.92	42.02
TraesCS5D01G229400.1	Wheat	nucleus	37.0	39.9
TraesCS4D01G131200.1	Wheat	plastid	31.38	37.75
TraesCS3D01G330400.1	Wheat	plastid	31.62	35.81
TraesCS7D01G091100.1	Wheat	nucleus	34.19	35.61
TraesCS1D01G362500.1	Wheat	nucleus	33.72	35.04
TraesCS4D01G182100.1	Wheat	nucleus	29.27	33.24
TraesCS7D01G483200.1	Wheat	nucleus	31.15	28.36
TraesCS2D01G506500.1	Wheat	nucleus	29.74	26.68
TraesCS4D01G291300.1	Wheat	nucleus	29.74	24.14
TraesCS2D01G256600.2	Wheat	nucleus	32.32	23.0
TraesCS4D01G237300.2	Wheat	nucleus	30.91	20.92
TraesCS5D01G415500.1	Wheat	nucleus	30.45	20.77
TraesCS6D01G205300.1	Wheat	nucleus	32.08	20.73
TraesCS2D01G357600.1	Wheat	nucleus	30.68	20.0
TraesCS3D01G389100.1	Wheat	nucleus	31.85	18.18

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5D01G150500	EnsemblPlants:TraesCS5D01G150500.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:239277618..239281825

Molecular Weight (calculated)

46761.1 Da

IEP (calculated)

5.370

GRAVY (calculated)

-0.717

Length

427 amino acids

Sequence
(BLAST)

001: MKRSPPPPPQ PSPSSSPACS LSPSPSSPSS SDSSSIAIPR KRARTQKAGS AKAKAAPKRA KKDASRSSKE PDASANGAAA SGKRSSIYRG VTRHRWTGRF
101: EAHLWDKNCF TSIQNKKKGR QVYLGAYDTE EAAARAYDLA ALKYWGPETT LNFTVDEYAK ERSEMEGVSR EEYLAALRRR SSGFSRGVSK YRGVARHHHN
201: GRWEARIGRV LGNKYLYLGT FDTQEEAARA YDLAAIEYRG ANAVTNFDIS RYLDQPQLLA QLEQGPQVVP ALQEELQHDQ QSDNAVQELN SGEAQKPGSV
301: NEPIAVDDTD SAGDIGAPLV FDSGVEENLW SPCMDYDLDP IFGRDISNSM NLSEFFNDPT FESNIGYLFE GCPDIDDCST RHGAGLAALG FLKEGDDNMK
401: DVPDMDAEIT PQANDVSCPP KMITVCN

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.