Factsheet for TraesCS3D01G389100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G427300.1	Wheat	nucleus, plastid	98.53	98.4
TraesCS3A01G395500.1	Wheat	nucleus	90.91	96.87
HORVU3Hr1G089160.2	Barley	nucleus	83.82	95.0
Os01t0899800-01	Rice	nucleus	64.71	69.64
KXG33917	Sorghum	nucleus	62.7	66.71
Zm00001d042492_P001	Maize	nucleus	61.5	65.16
GSMUA_Achr5P25620_001	Banana	nucleus	37.43	51.47
GSMUA_Achr8P09110_001	Banana	nucleus	39.97	50.34
TraesCS7D01G483200.1	Wheat	nucleus	29.14	46.48
TraesCS4D01G182100.1	Wheat	nucleus	22.99	45.74
TraesCS2D01G506500.1	Wheat	nucleus	27.81	43.7
TraesCS6D01G205300.1	Wheat	nucleus	37.3	42.21
TraesCS2D01G357600.1	Wheat	nucleus	36.76	41.98
TraesCS4D01G291300.1	Wheat	nucleus	28.88	41.06
TraesCS5D01G229400.1	Wheat	nucleus	18.98	35.86
TraesCS2D01G256600.2	Wheat	nucleus	28.74	35.83
TraesCS4D01G237300.2	Wheat	nucleus	29.68	35.18
TraesCS7D01G091100.1	Wheat	nucleus	19.12	34.88
TraesCS5D01G415500.1	Wheat	nucleus	27.94	33.39
TraesCS4D01G131200.1	Wheat	plastid	15.51	32.68
TraesCS1D01G362500.1	Wheat	nucleus	17.91	32.6
TraesCS5D01G150500.1	Wheat	plastid	18.18	31.85
TraesCS3D01G330400.1	Wheat	plastid	16.04	31.83

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF42	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3D01G389100	EnsemblPlants:TraesCS3D01G389100.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:504728169..504733856

Molecular Weight (calculated)

78499.0 Da

IEP (calculated)

7.433

GRAVY (calculated)

-0.414

Length

748 amino acids

Sequence
(BLAST)

001: MGDPMRGLGF RSRVSLCVSG EDRRQGFSMA GRRGSVSSSR VQVASTMATV NNWLGFSLSP QELPPSAAAS GDVSGADVCY NIPQDWNMRG SELSALVAEP
101: KLEDFLGGIS YSDHHHHQHK QPGGNNMVVP AGSASGGAAC YASSGGSSVG YLYHPSSASL QFADSVMVAS SGGGVHHDGA GIMANTTANG DLNNGGGGGG
201: IGLSMIKSWL RSQPSPAQPP EQQRADAAAQ GLSLSMNMAA CMPPLACGER GVPELAIVRK DDTAGGSSAG SGAVVSAGAD STGGSSGAVV ETPASRKTAD
301: TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGATTT TNFPVNNYEK ELEEMKHMTR QEFVASLRRK
401: SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMT RYDVKSILDS TALPIGSAAK RLKDAEAATA
501: SSLALQQQQH AGVVSGYDMG ALAAYGAAYH HHHPSVAGAV AWPTIAFQAP PQQVSGGGGG HMYHPYAHAQ PLRGWCKQEP DHAVIAAAHS LQELHHLNLG
601: AGGGAHDFFS QHAQAMQQQH GGLGSIDNGA GASLEHSTGS NSVVYNNGAV ESYMLPMSTT STAAVSHAHE QAAAHAHARA VAAQAYSGGN MSRDHDDGKI
701: AYENYLVSTA EAYGGGRMAA WAPASAPPAT SSSDMTGTQL FSVWNDTN

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.