Factsheet for TraesCS4D01G131200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G181300.1	Wheat	plastid	94.93	93.35
TraesCS4B01G136400.1	Wheat	plastid	86.76	93.33
Os01t0813300-00	Rice	nucleus	25.07	70.08
TraesCS3D01G330400.1	Wheat	plastid	61.97	58.36
KXG33588	Sorghum	plastid	50.99	45.36
Zm00001d043116_P002	Maize	nucleus	50.42	38.74
GSMUA_Achr3P09410_001	Banana	nucleus	34.93	34.64
Bra007066.1-P	Field mustard	plastid	36.62	31.55
CDX73488	Canola	nucleus	36.62	31.48
TraesCS5D01G150500.1	Wheat	plastid	37.75	31.38
CDX78230	Canola	plastid	36.62	31.33
TraesCS5D01G229400.1	Wheat	nucleus	34.65	31.06
VIT_13s0047g00340.t01	Wine grape	plastid	32.11	30.73
KRH13193	Soybean	nucleus	35.21	30.34
Bra003178.1-P	Field mustard	plastid	34.93	30.02
AT3G54320.1	Thale cress	plastid	36.9	29.91
CDX67595	Canola	plastid	34.93	29.81
TraesCS1D01G362500.1	Wheat	nucleus	34.08	29.44
KRH44733	Soybean	nucleus	34.93	29.11
PGSC0003DMT400070735	Potato	nucleus	35.49	29.03
Solyc01g096860.1.1	Tomato	nucleus	35.49	28.44
TraesCS7D01G091100.1	Wheat	nucleus	32.68	28.29
TraesCS4D01G182100.1	Wheat	nucleus	29.01	27.39
TraesCS7D01G483200.1	Wheat	nucleus	30.14	22.81
TraesCS2D01G506500.1	Wheat	nucleus	29.58	22.06
TraesCS4D01G291300.1	Wheat	nucleus	30.42	20.53
TraesCS2D01G256600.2	Wheat	nucleus	31.83	18.83
TraesCS5D01G415500.1	Wheat	nucleus	31.83	18.05
TraesCS6D01G205300.1	Wheat	nucleus	32.39	17.4
TraesCS4D01G237300.2	Wheat	nucleus	30.42	17.12
TraesCS2D01G357600.1	Wheat	nucleus	30.7	16.64
TraesCS3D01G389100.1	Wheat	nucleus	32.68	15.51

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4D01G131200	EnsemblPlants:TraesCS4D01G131200.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:117732413..117734939

Molecular Weight (calculated)

39306.5 Da

IEP (calculated)

7.934

GRAVY (calculated)

-0.454

Length

355 amino acids

Sequence
(BLAST)

001: MTNKKPTWSS SASACSGGSR IGLSCAVTNQ KRKKRARSDA VVLPSRGSSV YRGVSRHCAS GKYEVHLWDR HYRSTVQNRR GRQGAYDTEE AAARTYDLAA
101: LKYWGAQCGG LLLNFPVDTY KDELERMQRV TREEYVAILR RDSSGFARGA SKYRGVAKHH KKGRWEARIG CGSGSGGGSK RYLYLGIFSV FSIALSLQVR
201: SITFLWLITR NGTLNLHAVT QEEAARAYDL AAIQLRGLAA VTNFDVDSYC VDQQLQPPLC KVDLDPEPAG QLLLPKVEPK EEEPEPVPVL QDDVDCAIAE
301: VLQALCMDRA DFEARYPPRG APGRWPSDDD LRELPADMGF EDDIESVLFD APPAA

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.