Factsheet for PGSC0003DMT400070735

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096860.1.1	Tomato	nucleus	96.08	94.13
Os01t0813300-00	Rice	nucleus	21.2	72.44
CDX73488	Canola	nucleus	48.16	50.61
Bra007066.1-P	Field mustard	plastid	47.93	50.49
GSMUA_Achr8P09350_001	Banana	plastid	41.71	50.0
CDX78230	Canola	plastid	47.7	49.88
Bra003178.1-P	Field mustard	plastid	47.47	49.88
CDX67595	Canola	plastid	47.47	49.52
VIT_13s0047g00340.t01	Wine grape	plastid	42.17	49.33
Zm00001d005016_P005	Maize	plastid	42.86	46.73
AT3G54320.1	Thale cress	plastid	47.0	46.58
EES09182	Sorghum	nucleus	43.55	45.0
KRH13193	Soybean	nucleus	41.94	44.17
TraesCS5D01G150500.1	Wheat	plastid	42.4	43.09
TraesCS5A01G141700.1	Wheat	plastid	41.94	42.52
KRH44733	Soybean	nucleus	41.47	42.25
Os12t0126300-00	Rice	nucleus	43.09	41.93
HORVU5Hr1G045290.10	Barley	nucleus, plastid	41.94	41.74
PGSC0003DMT400087745	Potato	nucleus	27.88	41.16
GSMUA_Achr3P03630_001	Banana	plastid	38.48	40.34
TraesCS4B01G136400.1	Wheat	plastid	29.49	38.79
GSMUA_Achr3P09410_001	Banana	nucleus	31.34	37.99
Zm00001d052405_P002	Maize	plastid	37.33	37.24
PGSC0003DMT400041758	Potato	nucleus	22.35	37.16
KXG33588	Sorghum	plastid	34.1	37.09
PGSC0003DMT400006170	Potato	nucleus	34.1	36.45
PGSC0003DMT400055210	Potato	nucleus	23.96	36.36
TraesCS4D01G131200.1	Wheat	plastid	29.03	35.49
TraesCS4A01G181300.1	Wheat	plastid	29.26	35.18
TraesCS3B01G368400.1	Wheat	plastid	30.41	34.29
TraesCS3D01G330400.1	Wheat	plastid	29.26	33.69
PGSC0003DMT400035807	Potato	nucleus	24.88	33.33
Zm00001d043116_P002	Maize	nucleus	34.56	32.47
PGSC0003DMT400041881	Potato	nucleus	30.41	25.78
PGSC0003DMT400035354	Potato	nucleus	30.65	24.14
PGSC0003DMT400012588	Potato	nucleus	32.03	21.29
PGSC0003DMT400037835	Potato	nucleus	23.96	19.92

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975	GO:GO:0006091	GO:GO:0006109
GO:GO:0006110	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006629	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009056	GO:GO:0009058	GO:GO:0009744
GO:GO:0009987	GO:GO:0019432	GO:GO:1901959	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1CML9
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400027502	PGSC:PGSC0003DMG400027502	EnsemblPlants:PGSC0003DMT400070735	PRINTS:PR00367	PFscan:PS51032
PFscan:PS51257	PANTHER:PTHR32467	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00029549AF	SEG:seg

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027502]

Coordinates

chr1:-:74608384..74612339

Molecular Weight (calculated)

49642.3 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.840

Length

434 amino acids

Sequence
(BLAST)

001: MKKSPSFSCS SSSSSSSCIE QIHEETEKLN LKPKPKPRLK RASRAKKIVN ADSPSNNSST VRRSSIYRGV TRHRWTGRYE AHLWDKSTWN SIQNKKGRQR
101: AYDSEEAAAR TYDLAALKYW GPTTILNFPV ERYSQEFEEM QRLTKEEYLA SLRRMSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVYGNKY LYLGTYSTQE
201: EAAAAYDMAA IEYRGPNAVT NFDISRYADH LKKLREPNLL TKEENTESSA EVQSNEVIEQ YQPVQQEENQ LDYQLAELAA EPIVVPKLEF TPALDSDEVT
301: QPKVLKLEFA ADIMKAKDHE EEEDYPWMNM YLDNTFDSLP VSDFSLDKPA DLMDLFNDNS FDNNIDFNFY EQSSENEFNL NVFSDSMIID GIEADNEEVR
401: NNLSISPTSS SSMSRTTSIS NDMKDDGGLA SSTM

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.