Factsheet for PGSC0003DMT400087745

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010490.1.1	Tomato	plastid	91.5	73.9
VIT_11s0037g00870.t01	Wine grape	plastid	61.22	51.87
KRH63091	Soybean	plastid	59.52	50.43
KRH55024	Soybean	plastid	60.2	50.43
Os09t0423800-01	Rice	nucleus	56.12	45.21
KRH02994	Soybean	nucleus	55.78	44.32
KRH72352	Soybean	nucleus	54.76	44.11
TraesCS5D01G229400.1	Wheat	nucleus	56.12	41.67
TraesCS5A01G221600.1	Wheat	nucleus	56.12	41.67
TraesCS5B01G220400.2	Wheat	nucleus	55.44	41.06
GSMUA_Achr5P04670_001	Banana	nucleus	50.0	40.83
OQU89519	Sorghum	plastid	54.76	40.76
Zm00001d020540_P002	Maize	plastid	55.78	39.9
TraesCS6B01G153800.1	Wheat	nucleus	43.2	37.69
PGSC0003DMT400041758	Potato	nucleus	32.65	36.78
PGSC0003DMT400055210	Potato	nucleus	33.33	34.27
Os08t0442400-01	Rice	nucleus	48.64	34.13
Zm00001d032144_P001	Maize	nucleus	45.92	33.33
PGSC0003DMT400035807	Potato	nucleus	36.05	32.72
TraesCS6A01G125700.1	Wheat	nucleus	37.76	31.81
OQU80549	Sorghum	nucleus	47.28	31.59
PGSC0003DMT400006170	Potato	nucleus	42.18	30.54
PGSC0003DMT400070735	Potato	nucleus	41.16	27.88
PGSC0003DMT400041881	Potato	nucleus	35.37	20.31
PGSC0003DMT400037835	Potato	nucleus	35.71	20.11
PGSC0003DMT400035354	Potato	nucleus	32.31	17.24
PGSC0003DMT400012588	Potato	nucleus	34.35	15.47

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1DEG5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400037316	PGSC:PGSC0003DMG400037316	EnsemblPlants:PGSC0003DMT400087745
PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF68	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002963AAE
SEG:seg	:	:	:	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400037316]

Coordinates

chr12:-:1896595..1898380

Molecular Weight (calculated)

32789.1 Da

IEP (calculated)

4.636

GRAVY (calculated)

-0.548

Length

294 amino acids

Sequence
(BLAST)

001: MVDSNGNNAV YLGAYDDEGT AAHAYDLAAL KYWGSETILN FPVSTYEKEI IAMENQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG
101: NKYLYLGTYA TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLKPNKNN QSNPNVETNM ISTPNHTTTI TTTTTTSSSM GLVYPDLQLT TNTPISDVST
201: SQSRPSSATS ALGLLLQSTK FKEMMEMTLA VECPPAPIEL PDPDPPQSSS FPEDIKTYFD SQEFGNFGHD QGEDLVFNEI NSLMQPLLQF DYDA

Best Arabidopsis Sequence Match ( AT1G16060.3 )
(BLAST)

001: MFFFLVLLTM LTGIMADSSR AVYLGAYDEE DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN
101: GRWEARIGRV FGNKYLYLGT YATQEEAAIA YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD
201: RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.