Factsheet for PGSC0003DMT400035807

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g018290.2.1	Tomato	nucleus	87.96	60.9
PGSC0003DMT400041758	Potato	nucleus	40.43	50.19
PGSC0003DMT400055210	Potato	nucleus	39.2	44.41
KRH19032	Soybean	nucleus	62.96	38.64
VIT_11s0052g00840.t01	Wine grape	nucleus	59.57	38.52
GSMUA_AchrUn_...	Banana	nucleus	53.09	36.67
PGSC0003DMT400087745	Potato	nucleus	32.72	36.05
KRH02858	Soybean	nucleus	62.96	35.36
CDY42263	Canola	nucleus	51.54	30.42
CDY47943	Canola	nucleus	51.85	30.27
AT5G57390.1	Thale cress	nucleus	51.85	30.11
PGSC0003DMT400041881	Potato	nucleus	47.22	29.88
Bra020444.1-P	Field mustard	nucleus	51.23	29.7
PGSC0003DMT400035354	Potato	nucleus	45.37	26.68
PGSC0003DMT400037835	Potato	nucleus	41.05	25.48
PGSC0003DMT400070735	Potato	nucleus	33.33	24.88
PGSC0003DMT400006170	Potato	nucleus	31.17	24.88
PGSC0003DMT400012588	Potato	nucleus	40.43	20.06

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1B2U8	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG401013782	PGSC:PGSC0003DMG401013782
EnsemblPlants:PGSC0003DMT400035807	PIRSF:PIRSF038123	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000295CEE5	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG401013782]

Coordinates

chr7:-:12413346..12417359

Molecular Weight (calculated)

35773.2 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.643

Length

324 amino acids

Sequence
(BLAST)

001: MIVALDELNH HCGISVYLGG YDKEEKAARA YDLAALKYWG PTTTTNFPVS NYERELEEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR
101: IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDISRYDVKS IASSNLPVGG MSNKSKSSSD ESTKNVENRP NDISSAPNFP SQNPSMVNLG
201: FGLPIKQDAS DFWSSLGYNN DQNKNGSLFQ GTTMNAQGTT FFSNEVNNSN VMFNEQGYYN HDQQQQSGGS SSEISMALNS NIATTTTTID SSSFGNWMTP
301: SLHSFQSSAN NNLAPFHTPI FGME

Best Arabidopsis Sequence Match ( AT5G57390.2 )
(BLAST)

001: MQQVQSLGGV VFSSDLQPPL HPPSAAEIYD SELKSIAASF LGNYSGGHSS EVSSVHKQQP NPLAVSEASP TPKKNVESFG QRTSIYRGVT RHRWTGRYEA
101: HLWDNSCRRE GQSRKGRQVY LGGYDKEDKA ARAYDLAALK YWGPTTTTNF PISNYESELE EMKHMTRQEF VASLRRKSSG FSRGASMYRG VTRHHQHGRW
201: QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA VTNFDISRYD VKSIASCNLP VGGLMPKPSP ATAAADKTVD LSPSDSPSLT TPSLTFNVAT
301: PVNDHGGTFY HTGIPIKPDP ADHYWSNIFG FQANPKAEMR PLANFGSDLH NPSPGYAIMP VMQEGENNFG GSFVGSDGYN NHSAASNPVS AIPLSSTTTM
401: SNGNEGYGGN INWINNNISS SYQTAKSNLS VLHTPVFGLE

Arabidopsis Description

AIL5AP2-like ethylene-responsive transcription factor AIL5 [Source:UniProtKB/Swiss-Prot;Acc:Q6PQQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.