Factsheet for PGSC0003DMT400037835

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041758	Potato	nucleus	29.12	58.24
HORVU4Hr1G052880.2	Barley	nucleus	18.58	45.54
PGSC0003DMT400055210	Potato	nucleus	24.33	44.41
PGSC0003DMT400035807	Potato	nucleus	25.48	41.05
CDX78387	Canola	nucleus	30.65	39.8
GSMUA_Achr1P24940_001	Banana	nucleus	25.48	39.47
CDX97022	Canola	nucleus	30.46	38.88
TraesCS4B01G180600.1	Wheat	nucleus	26.05	36.27
TraesCS4D01G182100.1	Wheat	nucleus	26.05	36.17
VIT_00s0772g00020.t01	Wine grape	nucleus	31.42	35.81
TraesCS4A01G123800.1	Wheat	nucleus	25.86	35.71
PGSC0003DMT400087745	Potato	nucleus	20.11	35.71
Solyc05g051380.2.1	Tomato	nucleus	33.14	34.53
Bra024394.1-P	Field mustard	nucleus	29.31	34.08
CDY14577	Canola	nucleus	29.5	33.92
Os03t0313100-01	Rice	extracellular, nucleus	27.01	32.71
VIT_00s1291g00010.t01	Wine grape	nucleus	31.8	32.36
AT5G65510.2	Thale cress	nucleus	30.27	31.73
PGSC0003DMT400041881	Potato	nucleus	31.03	31.64
KXG39508	Sorghum	extracellular, nucleus	25.48	31.15
CDY08784	Canola	nucleus	29.69	30.33
PGSC0003DMT400035354	Potato	nucleus	31.8	30.13
Zm00001d028919_P001	Maize	extracellular, nucleus	24.52	30.12
Bra006065.1-P	Field mustard	nucleus	31.99	30.04
CDX69826	Canola	nucleus	31.99	29.82
Bra028584.1-P	Field mustard	nucleus	31.61	29.31
CDY40102	Canola	nucleus	31.03	29.08
Bra009026.1-P	Field mustard	nucleus	31.8	28.92
PGSC0003DMT400006170	Potato	nucleus	21.84	28.08
CDX85757	Canola	nucleus	31.03	27.98
AT5G10510.3	Thale cress	nucleus	31.23	26.99
GSMUA_Achr11P...	Banana	nucleus	27.59	26.09
PGSC0003DMT400070735	Potato	nucleus	19.92	23.96
PGSC0003DMT400012588	Potato	nucleus	29.5	23.58

Protein Annotations

Gene3D:1.10.1520.10	MapMan:15.5.7.3	Gene3D:3.30.160.20	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006396
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0090501	GO:GO:0090502	InterPro:IPR000999	InterPro:IPR001471	InterPro:IPR014720	InterPro:IPR036389
InterPro:IPR036955	UniProt:M1B5Z1	PFAM:PF00035	PFAM:PF00636	EnsemblPlantsGene:PGSC0003DMG400014598	PGSC:PGSC0003DMG400014598
EnsemblPlants:PGSC0003DMT400037835	PFscan:PS50142	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	InterPro:RNase_III_dom
InterPro:RNase_III_sf	SMART:SM00358	SMART:SM00380	SMART:SM00535	SUPFAM:SSF54171	SUPFAM:SSF54768
SUPFAM:SSF69065	UniParc:UPI0002958843	InterPro:dsRBD_dom	SEG:seg	:	:

Description

AP2 domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014598]

Coordinates

chr5:+:46042602..46050131

Molecular Weight (calculated)

57765.3 Da

IEP (calculated)

6.926

GRAVY (calculated)

-0.395

Length

522 amino acids

Sequence
(BLAST)

001: MAVGGFQTLP TNSGSEVDDS QVMGSEFATE SSNELGYPPI ITLGVNNNTN SEKAIVTAVN SGSLYLGGYD KEDKAARSYD LAALKYWGTS ATTNFLASDY
101: TKEIEEMKHM TKQEFIASLR RKSSGFSRGA SMYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFGASTPFA PLVTRTRNLR VGTTEEEAAE AYDIAAIKFR
201: GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK RLKISLESEQ KQSLNDTYQQ TLHNSVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS
301: SNDGGASDHT SGDSILNMLI TLKLFFDYPD LSSGMLTKLR AANVDTEKLA RVAIKYNLHN YLRHKRPLLK GQVEEFKEAI LEYPLHSLGL IDPPKVLADL
401: VESLIGAIHS DSNCLDTTWQ VVKNLLQPLI TPEKLEVNPV TKLYELCQKK GLKIKFVDHW EKTGEVEVFV DGKFVGKGKL CGKKITAKNR AAHNAYEQVV
501: QNLSVEVIIN DDHDQLCDET QS

Best Arabidopsis Sequence Match ( AT5G10510.7 )
(BLAST)

001: MYFLRHETQS WSNQKPQEFF KEEAQLAAAA SMADSTILTT FVDPQSHHSQ NHIPKLEDFL GDSSSIVRYS DNSQTDTQDS SLTQIYDPRH HHNQTGFYSD
101: HHDFKTMAGF QSAFSTNSGS EVDDSASIGR THLAGDYLGH VVESSGPELG FHGGSTGALS LGVNVNNNTN HRNDNDNHYR GNNNGERINN NNNNDNEKTD
201: SEKEKAVVAV ETSDCSNKKI ADTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEDKAARAYD LAALKYWNAT ATTNFPITNY
301: SKEVEEMKHM TKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE MNRYDVEAIM
401: KSALPIGGAA KRLKLSLEAA ASSEQKPILG HHQLHHFQQQ QQQQQLQLQS SPNHSSINFA LCPNSAVQSQ QIIPCGIPFE AAALYHHHQQ QQQHQQQQQQ
501: QNFFQHFPAN AASDSTGSNN NSNVQGTMGL MAPNPAEFFL WPNQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.