Factsheet for VIT_00s1291g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0772g00020.t01	Wine grape	nucleus	89.08	99.78
PGSC0003DMT400041758	Potato	nucleus	37.62	73.95
KRH74476	Soybean	nucleus	68.42	68.82
KRH39470	Soybean	nucleus	67.84	67.97
CDX97022	Canola	nucleus	51.66	64.79
Solyc05g051380.2.1	Tomato	nucleus	61.4	62.87
Bra006065.1-P	Field mustard	nucleus	66.47	61.33
Solyc11g010710.1.1	Tomato	nucleus	64.91	61.33
Bra028584.1-P	Field mustard	nucleus	67.25	61.28
CDY40102	Canola	nucleus	65.89	60.68
CDX78387	Canola	nucleus	47.37	60.45
CDX69826	Canola	nucleus	65.69	60.18
Bra024394.1-P	Field mustard	nucleus	51.66	59.02
Bra009026.1-P	Field mustard	nucleus	65.89	58.88
AT5G65510.2	Thale cress	nucleus	57.12	58.84
CDY14577	Canola	nucleus	51.85	58.59
CDX85757	Canola	nucleus	66.08	58.55
AT5G10510.3	Thale cress	nucleus	68.03	57.78
CDY08784	Canola	nucleus	51.46	51.66
GSMUA_Achr1P24940_001	Banana	nucleus	32.75	49.85
HORVU4Hr1G052880.2	Barley	nucleus	19.69	47.42
TraesCS4B01G180600.1	Wheat	nucleus	33.53	45.87
TraesCS4D01G182100.1	Wheat	nucleus	33.53	45.74
TraesCS4A01G123800.1	Wheat	nucleus	33.33	45.24
Os03t0313100-01	Rice	extracellular, nucleus	35.28	42.0
KXG39508	Sorghum	extracellular, nucleus	34.5	41.45
Zm00001d028919_P001	Maize	extracellular, nucleus	33.92	40.94
VIT_11s0052g00840.t01	Wine grape	nucleus	39.96	40.92
VIT_06s0004g01800.t01	Wine grape	nucleus	42.11	39.27
VIT_11s0037g00870.t01	Wine grape	plastid	25.93	38.33
VIT_01s0026g01690.t01	Wine grape	nucleus	24.76	38.14
VIT_04s0023g00950.t01	Wine grape	nucleus	30.8	38.07
VIT_09s0002g01370.t01	Wine grape	nucleus	38.6	36.73
VIT_09s0018g01650.t01	Wine grape	plastid	25.54	36.29
VIT_14s0108g00050.t01	Wine grape	nucleus	25.93	32.92
GSMUA_Achr11P...	Banana	nucleus	35.09	32.61
PGSC0003DMT400037835	Potato	nucleus	32.36	31.8
VIT_13s0047g00340.t01	Wine grape	plastid	22.81	31.54
VIT_18s0001g08610.t01	Wine grape	nucleus	39.77	30.27
VIT_07s0151g00440.t01	Wine grape	nucleus	39.38	29.79

Protein Annotations

EntrezGene:100854470	wikigene:100854470	MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB57449	ProteinID:CCB57449.1	InterPro:DNA-bd_dom_sf	UniProt:F6HRZ0	EMBL:FN596085
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100854470	wikigene:LOC100854470	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF33	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC60126	UniParc:UPI0002108879
ArrayExpress:VIT_00s1291g00010	EnsemblPlantsGene:VIT_00s1291g00010	EnsemblPlants:VIT_00s1291g00010.t01	unigene:Vvi.4902	RefSeq:XP_003635541	RefSeq:XP_003635541.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:38379449..38384637

Molecular Weight (calculated)

56336.1 Da

IEP (calculated)

6.463

GRAVY (calculated)

-0.552

Length

513 amino acids

Sequence
(BLAST)

001: MAPVTNWLSF SLSPMEMLRC SESQIMPYES SSAASPHYYV DNFYANGWTN PKPQVMYTEG DDYQVKEAAT PSITNSSMLT SFVDPQLHHQ QVPKLEDFLG
101: GDSSSLVRYS ESQTETQDSS LTHIYDHGSA YFNEQQDLKA IAATAGFQAF STNSGSEVED SSSIGRTQLA SSDFPGHSIE SGNELAFSHC PTGALSLGVT
201: TTTTTTQRSD QQAIVSADSD CSKKIADTFG QRTSIYRGVT RHRWTGRYEA HLWDNSSRRE GQARKGRQGG YDKEEKAARA YDLAALKYWG ASATTNFPVS
301: NYTKELEEMK HVTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGVNAVTN FEMNRYDVEA
401: IANSALPIGG AAKRLKLSLE SDQKPCLNLD QQTQSSASSS GITFGAIQPI PAIPCGIPLD TATAFYHHNL FNHLHSSNMG ASNSPGTTSS SMPTPMALLP
501: PPAEFFIWPH QSY

Best Arabidopsis Sequence Match ( AT5G10510.6 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVYLGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT
401: FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ QQQLQLQSSP NHSSINFALC
501: PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.