Factsheet for VIT_14s0108g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0026g01690.t01	Wine grape	nucleus	60.89	73.87
KRH40131	Soybean	nucleus	64.6	66.58
KRH01131	Soybean	nucleus	64.6	66.58
Solyc06g066390.1.1	Tomato	nucleus	57.67	57.53
PGSC0003DMT400006170	Potato	nucleus	55.2	54.93
Os06t0145700-00	Rice	nucleus	42.33	53.11
Solyc08g076380.1.1	Tomato	nucleus	55.45	51.49
TraesCS7D01G091100.1	Wheat	nucleus	51.49	50.73
TraesCS4A01G395400.1	Wheat	nucleus	50.99	50.37
TraesCS7A01G095100.1	Wheat	nucleus	50.49	50.0
Zm00001d011134_P001	Maize	nucleus	50.49	48.57
Os05t0536250-00	Rice	nucleus	51.24	48.03
VIT_11s0037g00870.t01	Wine grape	plastid	41.09	47.84
HORVU1Hr1G080350.3	Barley	nucleus	47.77	47.65
TraesCS1D01G362500.1	Wheat	nucleus	48.02	47.2
VIT_09s0018g01650.t01	Wine grape	plastid	41.58	46.54
EES19874	Sorghum	nucleus	50.99	46.5
TraesCS1A01G357800.1	Wheat	nucleus	47.52	46.49
Zm00001d045378_P001	Maize	nucleus	51.49	42.36
EER89186	Sorghum	nucleus	50.99	42.21
VIT_13s0047g00340.t01	Wine grape	plastid	34.16	37.2
VIT_00s0772g00020.t01	Wine grape	nucleus	32.92	29.04
VIT_11s0052g00840.t01	Wine grape	nucleus	32.92	26.55
VIT_00s1291g00010.t01	Wine grape	nucleus	32.92	25.93
VIT_09s0002g01370.t01	Wine grape	nucleus	32.67	24.49
VIT_06s0004g01800.t01	Wine grape	nucleus	32.18	23.64
VIT_04s0023g00950.t01	Wine grape	nucleus	22.52	21.93
VIT_18s0001g08610.t01	Wine grape	nucleus	33.91	20.33
VIT_07s0151g00440.t01	Wine grape	nucleus	33.42	19.91

Protein Annotations

EntrezGene:100254153	wikigene:100254153	MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	UniProt:A5ACS0
EMBL:AM423345	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN79925	ProteinID:CAN79925.1
ProteinID:CCB47509	ProteinID:CCB47509.1	InterPro:DNA-bd_dom_sf	EMBL:FN595239	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100254153
wikigene:LOC100254153	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF71
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000152396C	ArrayExpress:VIT_14s0108g00050	EnsemblPlantsGene:VIT_14s0108g00050	EnsemblPlants:VIT_14s0108g00050.t01
RefSeq:XP_003633849	RefSeq:XP_003633849.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:28882597..28884535

Molecular Weight (calculated)

45770.3 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.751

Length

404 amino acids

Sequence
(BLAST)

001: MEMMRVKSEE NLGRRRMCVA DAEAQGTRCV KRRRRDPAIV TLGCDDQSQQ QQLPNQQPDQ ASAATTVKRS SRFRGVSRHR WTGRFEAHLW DKFSWNVTQK
101: KKGKQGAYDE EESAARAYDL AALKYWGAST FTNFPVSDYE KEIEIMQSVT KEEYLACLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG
201: TYSTQEEAAR AYDIAAIEYR GINAVTNFDL STYIRWLNPA ANNPVVPHES RANTEPQALA SSNFVLSEES EPLFFHSNSF TMDDLNPPHK QEVFQTKIPI
301: EPCSKSSSPT ALGLLLRSSI FRELVEKNSN APEDETDAED TKNQQQVGSD DEYGIFYDGI GDIPFVCPSN GDRNELQERL PLPFTISQGN PYGTAVLTSM
401: QSIN

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.