Factsheet for TraesCS4A01G395400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G091100.1	Wheat	nucleus	97.31	97.07
TraesCS7A01G095100.1	Wheat	nucleus	96.82	97.06
Os06t0145700-00	Rice	nucleus	55.99	71.12
Zm00001d045378_P001	Maize	nucleus	70.42	58.66
EER89186	Sorghum	nucleus	69.68	58.4
VIT_14s0108g00050.t01	Wine grape	nucleus	50.37	50.99
KRH01131	Soybean	nucleus	47.43	49.49
KRH40131	Soybean	nucleus	47.19	49.23
Solyc06g066390.1.1	Tomato	nucleus	46.7	47.16
PGSC0003DMT400006170	Potato	nucleus	46.21	46.55
TraesCS1A01G357800.1	Wheat	nucleus	46.94	46.49
TraesCS5A01G221600.1	Wheat	nucleus	44.01	45.45
Solyc08g076380.1.1	Tomato	nucleus	45.72	42.99
TraesCS6A01G125700.1	Wheat	nucleus	32.52	38.11
TraesCS5A01G141700.1	Wheat	plastid	35.45	33.88
TraesCS4A01G181300.1	Wheat	plastid	28.61	32.41
TraesCS4A01G123800.1	Wheat	nucleus	28.85	31.22
TraesCS7A01G495800.1	Wheat	nucleus	31.54	27.51
TraesCS2A01G505600.1	Wheat	nucleus	30.56	26.15
TraesCS4A01G011600.1	Wheat	nucleus	30.81	23.86
TraesCS2A01G267600.2	Wheat	nucleus	32.27	21.96
TraesCS6A01G229500.1	Wheat	nucleus	34.23	21.24
TraesCS5A01G405400.1	Wheat	nucleus	31.54	20.51
TraesCS3A01G395500.1	Wheat	nucleus	34.72	20.23
TraesCS4A01G060400.1	Wheat	nucleus	30.56	19.94

Protein Annotations

MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF73	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G395400	EnsemblPlants:TraesCS4A01G395400.1
TIGR:cd00018	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:670146027..670148458

Molecular Weight (calculated)

43767.4 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.410

Length

409 amino acids

Sequence
(BLAST)

001: MVKDELINGI VAAGGGGGGV RYCEAAPRAA PVIDDGMKIS VKRRKREPPA GSGVSGVTGN GKDGAGDKLV GGNAAAKRSS RFRGVSRHRW TGRFEAHLWD
101: KGTWNPTQKK KGKQVYLGAY NEEEAAARAY DLAALKYWGP TTYTNFPVVD YEKELKVMQG VSREEYLASI RRKSNGFSRG VSKYRGVARH HHNGRWEARI
201: GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSTYIRWLK PGAAPAEAMS GLSGAPSPSS TTTATTLITP RDMGGLRLLP PSRNSLSLLG
301: DVGSMVFGGG PSPSPSPSST TTALSLLLRS SVFQELVAQQ HQPAADVDAD QAAVPALENE PGEALYGSGG VEGEDAAFSC SMYELDDSFA RIEDSLWDCL
401: GSCDPAIPI

Best Arabidopsis Sequence Match ( AT1G79700.2 )
(BLAST)

001: MAKVSGRSKK TIVDDEISDK TASASESASI ALTSKRKRKS PPRNAPLQRS SPYRGVTRHR WTGRYEAHLW DKNSWNDTQT KKGRQVYLGA YDEEEAAARA
101: YDLAALKYWG RDTLLNFPLP SYDEDVKEME GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE AAIAYDIAAI
201: EYRGLNAVTN FDVSRYLNPN AAADKADSDS KPIRSPSREP ESSDDNKSPK SEEVIEPSTS PEVIPTRRSF PDDIQTYFGC QDSGKLATEE DVIFDCFNSY
301: INPGFYNEFD YGP

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:A8MQS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.