Factsheet for TraesCS6A01G229500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G205300.1	Wheat	nucleus	95.45	95.16
TraesCS6B01G252000.1	Wheat	nucleus	94.39	93.96
HORVU6Hr1G057060.3	Barley	nucleus	92.26	93.25
Zm00001d017207_P001	Maize	nucleus	79.67	77.66
KXG30667	Sorghum	nucleus	81.18	77.54
CDY68782	Canola	nucleus	26.25	53.4
GSMUA_Achr2P05880_001	Banana	nucleus	45.22	52.1
CDY72251	Canola	nucleus	25.64	51.84
CDY72154	Canola	nucleus	25.64	51.37
TraesCS4A01G123800.1	Wheat	nucleus	27.31	47.62
KRH24688	Soybean	nucleus	38.24	45.57
VIT_06s0004g01800.t01	Wine grape	nucleus	37.63	45.09
TraesCS7A01G495800.1	Wheat	nucleus	31.87	44.78
Solyc11g061750.1.1	Tomato	nucleus	36.42	43.8
PGSC0003DMT400035354	Potato	nucleus	36.57	43.74
CDY06387	Canola	nucleus	36.57	43.04
CDY57915	Canola	nucleus	36.72	42.91
Bra018899.1-P	Field mustard	nucleus	36.27	42.75
Bra031234.1-P	Field mustard	nucleus	35.96	42.55
AT1G51190.1	Thale cress	nucleus	36.57	42.43
AT3G20840.1	Thale cress	nucleus	36.87	42.33
Bra030451.1-P	Field mustard	nucleus	36.12	42.2
CDY29623	Canola	nucleus	35.81	41.99
CDY35571	Canola	nucleus	35.66	41.74
KRH29690	Soybean	nucleus	37.63	41.47
TraesCS4A01G011600.1	Wheat	nucleus	32.78	40.91
CDY19597	Canola	nucleus	36.12	40.48
TraesCS2A01G505600.1	Wheat	nucleus	29.29	40.38
TraesCS3A01G395500.1	Wheat	nucleus	42.79	40.17
TraesCS2A01G267600.2	Wheat	nucleus	32.47	35.61
TraesCS5A01G221600.1	Wheat	nucleus	21.24	35.35
TraesCS4A01G060400.1	Wheat	nucleus	33.23	34.93
TraesCS5A01G405400.1	Wheat	nucleus	33.23	34.82
TraesCS7A01G095100.1	Wheat	nucleus	21.4	34.56
TraesCS4A01G395400.1	Wheat	nucleus	21.24	34.23
Bra023921.1-P	Field mustard	nucleus	23.82	33.62
TraesCS1A01G357800.1	Wheat	nucleus	20.49	32.69
TraesCS5A01G141700.1	Wheat	plastid	20.94	32.24
TraesCS4A01G181300.1	Wheat	plastid	17.3	31.58
TraesCS6A01G125700.1	Wheat	nucleus	16.69	31.52

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS6A01G229500	EnsemblPlants:TraesCS6A01G229500.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:432253559..432257969

Molecular Weight (calculated)

70617.3 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.597

Length

659 amino acids

Sequence
(BLAST)

001: MASGNDWLGF SLSGQENPQP HQDSSPPADI DIAGASGFYG LPTQPAPDAQ LGVPGHHQPS YGITEAFNRG AHEIHDWNMR GDLDYNGGAS ELSMLVGSSA
101: VGGKRAAMEA ETEPKLEDFL VGNSFVSEQD QAGGFLFSGV PMATSTNSNS RSNTMELSMI KSWLRDNQVP QAPHPQSQTG APAQQPQPHE EMGTDASSFD
201: PLGRNGALVV AGSSQSLALS MSTGSGSHLP MAVLGGSPSG GVSESTSSEN KRASGAMDSP GGAVEAVARK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD
301: NSCRREGQSR KGRQVYLGGY DKEDKAARAY DLAALKYWGT TTTTNFPINT YEKEVDEMKH MTRQEYIAYL RRNSSGFSRG ASKYRGVTRH HQHGRWQARI
401: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKTI LESSTLPVGG AARRPKEVAD HPEAGATIWR AGMDGGVISQ LTDVGMGTYA
501: SYHHGWPTIA FQQPSPLSVH YPYVAQPSRG WCKPEQDASV ATQSLQDLQQ LHLGTAAHNY FQASSSSTVY NGGGYQQGTS GNAFLMPAST VVDEQGHSST
601: ATNQGSTCSY GDEEGKLNLG YDAMAMASTG ADPYAAAPTV SIARANGYSN NWSSPFNGM

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.