Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57915 | Canola | nucleus | 93.55 | 95.21 |
| Bra023921.1-P | Field mustard | nucleus | 76.48 | 94.0 |
| Bra031234.1-P | Field mustard | nucleus | 90.77 | 93.54 |
| CDY06387 | Canola | nucleus | 90.24 | 92.5 |
| CDY68782 | Canola | nucleus | 52.09 | 92.28 |
| CDY19597 | Canola | nucleus | 90.94 | 88.78 |
| AT1G51190.1 | Thale cress | nucleus | 78.57 | 79.4 |
| VIT_06s0004g01800.t01 | Wine grape | nucleus | 66.38 | 69.27 |
| Solyc11g061750.1.1 | Tomato | nucleus | 64.98 | 68.07 |
| PGSC0003DMT400035354 | Potato | nucleus | 64.81 | 67.51 |
| KRH24688 | Soybean | nucleus | 64.98 | 67.45 |
| KRH29690 | Soybean | nucleus | 65.16 | 62.54 |
| AT1G72570.1 | Thale cress | nucleus | 32.58 | 45.06 |
| GSMUA_Achr2P05880_001 | Banana | nucleus | 40.77 | 40.91 |
| AT5G65510.2 | Thale cress | nucleus | 35.02 | 40.36 |
| AT5G57390.1 | Thale cress | nucleus | 37.98 | 39.07 |
| AT1G79700.2 | Thale cress | nucleus | 21.08 | 38.66 |
| Os02t0614300-01 | Rice | mitochondrion, nucleus | 21.43 | 38.32 |
| AT5G17430.1 | Thale cress | nucleus | 38.68 | 38.01 |
| HORVU6Hr1G057060.3 | Barley | nucleus | 42.33 | 37.27 |
| TraesCS6D01G205300.1 | Wheat | nucleus | 42.51 | 36.91 |
| TraesCS6A01G229500.1 | Wheat | nucleus | 42.33 | 36.87 |
| AT5G10510.3 | Thale cress | nucleus | 38.68 | 36.76 |
| TraesCS6B01G252000.1 | Wheat | nucleus | 42.16 | 36.56 |
| Zm00001d017207_P001 | Maize | nucleus | 42.86 | 36.39 |
| TraesCS2D01G357600.1 | Wheat | nucleus | 41.46 | 36.34 |
| Os04t0504500-01 | Rice | nucleus | 41.64 | 36.32 |
| AT1G16060.1 | Thale cress | nucleus | 21.78 | 36.23 |
| TraesCS2B01G378100.1 | Wheat | nucleus | 41.64 | 36.21 |
| HORVU2Hr1G087310.1 | Barley | nucleus | 41.46 | 36.12 |
| KXG30667 | Sorghum | nucleus | 42.86 | 35.65 |
| AT4G37750.1 | Thale cress | nucleus | 33.8 | 34.95 |
| AT3G54320.1 | Thale cress | plastid | 24.04 | 31.51 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | EntrezGene:821632 | ProteinID:AEE76430.1 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ArrayExpress:AT3G20840 | EnsemblPlantsGene:AT3G20840 | RefSeq:AT3G20840 | TAIR:AT3G20840 | RefSeq:AT3G20840-TAIR-G |
| EnsemblPlants:AT3G20840.1 | TAIR:AT3G20840.1 | EMBL:AY506549 | EMBL:AY585682 | Unigene:At.38171 | ProteinID:BAB02492.1 |
| InterPro:DNA-bd_dom_sf | GO:GO:0000723 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 |
| GO:GO:0007389 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009873 | GO:GO:0009987 | GO:GO:0010449 | GO:GO:0016043 | GO:GO:0019827 | GO:GO:0040007 |
| GO:GO:0048364 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_188720.2 | PFAM:PF00847 | Symbol:PLT1 |
| PO:PO:0009005 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF22 | UniProt:Q5YGP8 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00004470E7 | SEG:seg | : | : |
Description
PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
Coordinates
chr3:+:7300444..7303693
Molecular Weight (calculated)
62878.9 Da
IEP (calculated)
6.360
GRAVY (calculated)
-0.737
Length
574 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.