Factsheet for GSMUA_Achr2P05880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07890_001	Banana	nucleus	59.97	54.97
CDY68782	Canola	nucleus	30.07	53.09
GSMUA_Achr6P28550_001	Banana	nucleus	58.92	52.74
CDY72251	Canola	nucleus	29.72	52.15
CDY72154	Canola	nucleus	29.72	51.67
GSMUA_AchrUn_...	Banana	nucleus	34.97	50.51
GSMUA_Achr8P09110_001	Banana	nucleus	52.27	50.34
GSMUA_Achr8P26510_001	Banana	nucleus	29.02	49.11
GSMUA_Achr3P21460_001	Banana	nucleus	52.1	48.69
GSMUA_Achr9P13660_001	Banana	nucleus	37.06	48.62
GSMUA_Achr5P25620_001	Banana	nucleus	46.15	48.53
Os02t0614300-01	Rice	mitochondrion, nucleus	26.92	47.98
GSMUA_Achr1P24940_001	Banana	nucleus	27.97	47.48
Zm00001d017207_P001	Maize	nucleus	55.42	46.89
GSMUA_Achr3P05070_001	Banana	nucleus	36.89	46.37
GSMUA_AchrUn_...	Banana	nucleus	37.94	46.27
GSMUA_Achr4P32280_001	Banana	nucleus	34.09	46.1
HORVU6Hr1G057060.3	Barley	nucleus	52.45	46.01
TraesCS6D01G205300.1	Wheat	nucleus	53.15	45.99
KXG30667	Sorghum	nucleus	55.24	45.8
TraesCS6A01G229500.1	Wheat	nucleus	52.1	45.22
TraesCS6B01G252000.1	Wheat	nucleus	52.27	45.17
Os04t0504500-01	Rice	nucleus	51.57	44.83
TraesCS2B01G378100.1	Wheat	nucleus	51.05	44.24
HORVU2Hr1G087310.1	Barley	nucleus	50.87	44.16
TraesCS2D01G357600.1	Wheat	nucleus	50.35	43.97
Solyc11g061750.1.1	Tomato	nucleus	41.43	43.25
PGSC0003DMT400035354	Potato	nucleus	41.61	43.19
KRH24688	Soybean	nucleus	41.26	42.68
VIT_06s0004g01800.t01	Wine grape	nucleus	40.91	42.55
CDY06387	Canola	nucleus	40.21	41.07
AT1G51190.1	Thale cress	nucleus	40.73	41.02
CDY57915	Canola	nucleus	40.38	40.96
AT3G20840.1	Thale cress	nucleus	40.91	40.77
Bra031234.1-P	Field mustard	nucleus	39.69	40.75
Bra018899.1-P	Field mustard	nucleus	39.69	40.61
GSMUA_Achr1P21950_001	Banana	nucleus	39.86	40.5
Bra030451.1-P	Field mustard	nucleus	39.86	40.43
CDY29623	Canola	nucleus	39.51	40.21
CDY35571	Canola	nucleus	39.34	39.96
KRH29690	Soybean	nucleus	41.08	39.3
CDY19597	Canola	nucleus	39.86	38.78
GSMUA_Achr3P15150_001	Banana	nucleus	37.06	38.48
GSMUA_Achr7P00740_001	Banana	nucleus	35.84	37.89
GSMUA_Achr1P12410_001	Banana	nucleus	35.66	37.02
GSMUA_Achr8P09350_001	Banana	plastid	23.25	36.74
GSMUA_Achr3P30690_001	Banana	nucleus	36.54	35.85
GSMUA_Achr5P04670_001	Banana	nucleus	22.38	35.56
GSMUA_Achr7P27500_001	Banana	nucleus	36.54	33.93
GSMUA_Achr3P09410_001	Banana	nucleus	20.45	32.68
GSMUA_Achr3P03630_001	Banana	plastid	23.43	32.37
GSMUA_Achr11P...	Banana	nucleus	30.24	31.34
Bra023921.1-P	Field mustard	nucleus	24.48	29.98
GSMUA_Achr3P32510_001	Banana	nucleus	20.1	27.19

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G05880_001
EnsemblPlants:GSMUA_Achr2P05880_001	EnsemblPlants:GSMUA_Achr2T05880_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0S5H9	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00029653C0	SEG:seg	:	:	:	:

Description

Putative AP2-like ethylene-responsive transcription factor BBM2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05880_001]

Coordinates

chr2:-:10812080..10814536

Molecular Weight (calculated)

62424.8 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.664

Length

572 amino acids

Sequence
(BLAST)

001: MNNWLGFSPS PQELPPSQAH QTHPSPGIIS GGDVSTDPSS VTPLGVPSQR PDGSFGILET LDAPDHHLQG WSMKSIGYKG SDHELSVLVG SSSNQNTMDE
101: EEQPKLEDYL GGHSFARYDR KLPPIAGNYA DSGGYMLSNG CNNGGLMSST DGCNSSSIGL SMIKAWLRNQ PAPPAPVEGN GSDAAGCTNM IAQSLSLSMK
201: TVPRKSMDSF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGKQV YLGGYDKEDK AARAYDLAAL KYWGASTTTN FPISNYEKEV EEMKHMTRQE
301: YVASLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN AVTNFDMSRY DVKAILKSSA LPVGGAAKRL
401: DEISDDTEAS VDGSMASHFT ETLGGWPTIA FRQGHPLSCH YPYGQPSGWC KQEQGAMTAA AARRVQDLQQ FNLGSNTQTF FQPSMHQRMM VPDAVIYTGN
501: AGGNYQMDGI TGRNMMPVST MVGNQGQTEG KQMAQVNVLA AGDPYGGRNV YYLSQEDSGH EQTNGSNNWM AS

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.