Factsheet for GSMUA_Achr9P07890_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28550_001	Banana	nucleus	84.62	82.63
GSMUA_Achr8P09110_001	Banana	nucleus	61.54	64.65
GSMUA_Achr2P05880_001	Banana	nucleus	54.97	59.97
GSMUA_Achr3P21460_001	Banana	nucleus	58.17	59.31
GSMUA_Achr5P25620_001	Banana	nucleus	47.12	54.04
GSMUA_Achr8P26510_001	Banana	nucleus	28.21	52.07
GSMUA_AchrUn_...	Banana	nucleus	32.37	51.01
GSMUA_Achr9P13660_001	Banana	nucleus	34.29	49.08
GSMUA_Achr4P32280_001	Banana	nucleus	33.17	48.94
KRH40267	Soybean	nucleus	54.17	47.81
GSMUA_Achr3P05070_001	Banana	nucleus	34.46	47.25
GSMUA_Achr1P24940_001	Banana	nucleus	25.48	47.18
GSMUA_AchrUn_...	Banana	nucleus	34.13	45.42
KRH34229	Soybean	nucleus	41.67	45.22
GSMUA_Achr1P21950_001	Banana	nucleus	39.42	43.69
GSMUA_Achr3P15150_001	Banana	nucleus	35.9	40.65
GSMUA_Achr7P00740_001	Banana	nucleus	33.97	39.19
GSMUA_Achr1P12410_001	Banana	nucleus	33.65	38.11
GSMUA_Achr3P30690_001	Banana	nucleus	35.42	37.91
GSMUA_Achr5P04670_001	Banana	nucleus	21.63	37.5
GSMUA_Achr8P09350_001	Banana	plastid	21.31	36.74
GSMUA_Achr7P27500_001	Banana	nucleus	34.94	35.39
GSMUA_Achr3P09410_001	Banana	nucleus	19.23	33.52
GSMUA_Achr11P...	Banana	nucleus	29.17	32.97
GSMUA_Achr3P03630_001	Banana	plastid	21.63	32.61
GSMUA_Achr3P32510_001	Banana	nucleus	19.07	28.13

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr9G07890_001
EnsemblPlants:GSMUA_Achr9P07890_001	EnsemblPlants:GSMUA_Achr9T07890_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0TYE8	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000294B94C	SEG:seg	:	:	:	:

Description

Putative AP2-like ethylene-responsive transcription factor BBM2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G07890_001]

Coordinates

chr9:+:5062475..5065335

Molecular Weight (calculated)

66909.3 Da

IEP (calculated)

6.747

GRAVY (calculated)

-0.570

Length

624 amino acids

Sequence
(BLAST)

001: MNNWLGFSLS PQELPPSQSH QTHPSSGIIS NDEVSADCYG LSTDSSSTAP LGIPTLRPDG SFGILEAIHR PGYHSQGSSS ELSMLVGASS NQNTMDNEQP
101: KLEDFLGGHS FARHDQKLPS IAGNYDNPGG YMFSHGCNNG GLMSSNAGCS SSSIGLSMIK TWLRNQPAPP SQVEGNGTSG DGCSTMNGGG AVVGNVGGAL
201: TSSQSLSLEG SGVSAALDAQ SGALETVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQAGGYDK EEKAARAYDL AALKYWGTST
301: TTNFPISNYE KELEEMKHMT RQEYVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM
401: SRYDVKAILE SSTLPIGGAA KRLKEISEHT EASVDGRMAD VGSITSHLTD TISSYASHHH GWPTMGFQQS QPLAVHYPYG HQPRGWYCKQ EQDAVIAAAH
501: GLQDLQQLNL GNSTHNFFQP SVIHNLVNLE SSSMDHGTGG GFVMPVGTTM VGDQNNPGSS SSYAESEGKQ MGYENILSTG DPYAGRSIYY LSQQSGGGSG
601: ASANGGNNVT VCHGAPLFTV WNDA

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.