Factsheet for GSMUA_Achr5P04670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr6P34400_001
GSMUA_Achr7P15340_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16060.1	GSMUA_Achr10P...	AT3G55150.1	21798944
AT1G16060.1	GSMUA_Achr10P...	AT3G55150.1	21798944
AT1G16060.1	GSMUA_Achr6P34400_001	AT3G55150.1	21798944
AT1G16060.1	GSMUA_Achr7P15340_001	AT3G55150.1	21798944
AT1G16060.1	GSMUA_AchrUn_...	AT3G55150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33356	Canola	nucleus	35.28	66.15
KRH47304	Soybean	nucleus	52.22	64.83
CDX88560	Canola	nucleus	52.5	61.16
Bra035137.1-P	Field mustard	nucleus	52.22	61.04
KRH44591	Soybean	plastid	52.78	60.7
CDX87360	Canola	nucleus	51.94	59.55
KRH63091	Soybean	plastid	56.67	58.79
VIT_11s0037g00870.t01	Wine grape	plastid	56.39	58.5
AT1G79700.2	Thale cress	nucleus	50.56	58.15
VIT_09s0018g01650.t01	Wine grape	plastid	58.06	57.89
KRH55024	Soybean	plastid	56.39	57.83
Solyc06g068570.2.1	Tomato	nucleus	50.0	57.14
CDY35066	Canola	nucleus	51.39	56.06
Solyc03g117720.2.1	Tomato	nucleus, plastid	57.5	55.8
Bra026082.1-P	Field mustard	nucleus	51.11	55.76
Os09t0423800-01	Rice	nucleus	55.56	54.79
KRH72352	Soybean	nucleus	55.0	54.25
AT1G16060.1	Thale cress	nucleus	51.94	54.2
Solyc12g010490.1.1	Tomato	plastid	54.44	53.85
KRH02994	Soybean	nucleus	55.0	53.51
TraesCS5D01G229400.1	Wheat	nucleus	56.67	51.52
TraesCS5B01G220400.2	Wheat	nucleus	56.67	51.39
TraesCS5A01G221600.1	Wheat	nucleus	56.39	51.26
PGSC0003DMT400087745	Potato	nucleus	40.83	50.0
TraesCS6B01G153800.1	Wheat	nucleus	46.39	49.55
OQU89519	Sorghum	plastid	53.89	49.11
Zm00001d020540_P002	Maize	plastid	55.0	48.18
Os08t0442400-01	Rice	nucleus	52.22	44.87
TraesCS6A01G125700.1	Wheat	nucleus	42.22	43.55
GSMUA_Achr8P09350_001	Banana	plastid	43.06	42.82
Zm00001d032144_P001	Maize	nucleus	45.56	40.49
OQU80549	Sorghum	nucleus	46.94	38.41
GSMUA_Achr3P03630_001	Banana	plastid	43.89	38.16
GSMUA_Achr3P09410_001	Banana	nucleus	36.11	36.31
GSMUA_Achr8P26510_001	Banana	nucleus	33.33	35.5
GSMUA_Achr1P24940_001	Banana	nucleus	32.22	34.42
GSMUA_Achr3P32510_001	Banana	nucleus	37.78	32.15
GSMUA_AchrUn_...	Banana	nucleus	34.17	31.06
GSMUA_Achr4P32280_001	Banana	nucleus	36.11	30.73
GSMUA_Achr9P13660_001	Banana	nucleus	35.56	29.36
GSMUA_AchrUn_...	Banana	nucleus	35.56	27.29
GSMUA_Achr3P05070_001	Banana	nucleus	34.17	27.03
GSMUA_Achr7P00740_001	Banana	nucleus	36.67	24.4
GSMUA_Achr5P25620_001	Banana	nucleus	35.28	23.35
GSMUA_Achr3P15150_001	Banana	nucleus	35.28	23.05
GSMUA_Achr1P12410_001	Banana	nucleus	35.0	22.87
GSMUA_Achr1P21950_001	Banana	nucleus	35.28	22.56
GSMUA_Achr2P05880_001	Banana	nucleus	35.56	22.38
GSMUA_Achr8P09110_001	Banana	nucleus	36.67	22.22
GSMUA_Achr9P07890_001	Banana	nucleus	37.5	21.63
GSMUA_Achr3P30690_001	Banana	nucleus	35.0	21.61
GSMUA_Achr3P21460_001	Banana	nucleus	36.67	21.57
GSMUA_Achr11P...	Banana	nucleus	32.5	21.2
GSMUA_Achr6P28550_001	Banana	nucleus	36.94	20.81
GSMUA_Achr7P27500_001	Banana	nucleus	35.0	20.45

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr5G04670_001
EnsemblPlants:GSMUA_Achr5P04670_001	EnsemblPlants:GSMUA_Achr5T04670_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SVP6	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF20	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002962D6C	SEG:seg	:	:	:	:

Description

AP2-like ethylene-responsive transcription factor At1g16060 [Source:GMGC_GENE;Acc:GSMUA_Achr5G04670_001]

Coordinates

chr5:+:3450560..3453138

Molecular Weight (calculated)

40888.7 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.772

Length

360 amino acids

Sequence
(BLAST)

001: MGKIQKNNSG NQKNVDKNDS SSSMKMKRTR RSVPRDSPSQ RSSVFRGVTR HRWTGRYEAH LWDKNCWNES QNKKGKQGSY DDEEAAAHAY DLAALKYWGH
101: DTILNFPTSA YQEELKDMEN QSREEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVSGNKYLY LGTYATQEEA ATAYDIAAIE YRGLNAVTNF
201: DLSRYIKWLQ PKGLDAEPGS HGGAAQSMQQ QDGISMLEKT SAESSSTSST PGCDDKPTGC SFPDYIQTYF ECQDNGGFIE EEDSIFGDLS TLISPITDLK
301: GGKLRQKVDY TEEQNIDSGR RQLFFFLSFF FLPKEMIKLI IDSFLFPSMW IVIVLPLPTQ

Best Arabidopsis Sequence Match ( AT1G16060.1 )
(BLAST)

001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC

Arabidopsis Description

ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.