Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g054820.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16060.1 | Solyc05g054820.1.1 | AT3G55150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47304 | Soybean | nucleus | 55.8 | 71.38 |
| VIT_09s0018g01650.t01 | Wine grape | plastid | 68.73 | 70.64 |
| CDY33356 | Canola | nucleus | 35.31 | 68.23 |
| Solyc06g068570.2.1 | Tomato | nucleus | 57.68 | 67.94 |
| KRH44591 | Soybean | plastid | 56.33 | 66.77 |
| CDX88560 | Canola | nucleus | 53.1 | 63.75 |
| Bra035137.1-P | Field mustard | nucleus | 52.83 | 63.64 |
| CDY35066 | Canola | nucleus | 55.8 | 62.73 |
| Bra026082.1-P | Field mustard | nucleus | 55.53 | 62.42 |
| AT1G79700.2 | Thale cress | nucleus | 52.56 | 62.3 |
| Solyc12g010490.1.1 | Tomato | plastid | 60.92 | 62.09 |
| CDX87360 | Canola | nucleus | 52.02 | 61.47 |
| AT1G16060.1 | Thale cress | nucleus | 56.6 | 60.87 |
| Os09t0423800-01 | Rice | nucleus | 58.22 | 59.18 |
| GSMUA_Achr5P04670_001 | Banana | nucleus | 55.8 | 57.5 |
| TraesCS5D01G229400.1 | Wheat | nucleus | 58.22 | 54.55 |
| TraesCS5A01G221600.1 | Wheat | nucleus | 57.95 | 54.29 |
| TraesCS5B01G220400.2 | Wheat | nucleus | 57.95 | 54.16 |
| OQU89519 | Sorghum | plastid | 56.6 | 53.16 |
| Zm00001d020540_P002 | Maize | plastid | 58.49 | 52.8 |
| TraesCS6B01G153800.1 | Wheat | nucleus | 47.71 | 52.52 |
| Os08t0442400-01 | Rice | nucleus | 54.72 | 48.45 |
| TraesCS6A01G125700.1 | Wheat | nucleus | 43.94 | 46.7 |
| Zm00001d032144_P001 | Maize | nucleus | 47.44 | 43.46 |
| OQU80549 | Sorghum | nucleus | 48.25 | 40.68 |
| Solyc06g066390.1.1 | Tomato | nucleus | 43.4 | 39.75 |
| Solyc01g096860.1.1 | Tomato | nucleus | 43.94 | 36.79 |
| Solyc08g076380.1.1 | Tomato | nucleus | 41.78 | 35.63 |
| Solyc07g018290.2.1 | Tomato | nucleus | 35.58 | 28.21 |
| Solyc05g051380.2.1 | Tomato | nucleus | 37.2 | 27.54 |
| Solyc11g010710.1.1 | Tomato | nucleus | 38.01 | 25.97 |
| Solyc11g061750.1.1 | Tomato | nucleus | 35.58 | 24.09 |
| Solyc04g077490.2.1 | Tomato | nucleus | 37.74 | 21.47 |
| Solyc11g008560.1.1 | Tomato | nucleus | 38.54 | 21.12 |
| Solyc02g092050.2.1 | Tomato | nucleus | 36.39 | 20.9 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:K4BLS3 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 |
| PANTHER:PTHR32467:SF20 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc03g117720.2 | EnsemblPlants:Solyc03g117720.2.1 | UniParc:UPI000276787B |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:+:66775127..66779386
Molecular Weight (calculated)
42096.0 Da
IEP (calculated)
7.249
GRAVY (calculated)
-0.893
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTSKSNTT STSSSSSSNK CDSKAKRSNK IDGNAIGKVK RTRKSVPRDS PPQRSSIYRG VTRHRWTGRY EAHLWDKNCW NETQNKKGRQ VYLGAYDDEE
101: AAAHAYDLAA LKYWGQDTML NFPIMTYENE LKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY
201: DMAAIEYRGL NAVTNFDLSR YIKWLRPSDQ TNNDNTIINP EPNPNPNPND IHLMPNTKDD TNFTQQQQQI SGCDVTVAAL PHPGGGAATS SAALELLLQS
301: TKLKEMLERR SEVIECPETP PEPDRPRRSF PDDIQTYFDC QEPSSFIEEH DIIFGDLDSL TLPMFQCELI N
101: AAAHAYDLAA LKYWGQDTML NFPIMTYENE LKEMEGQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY
201: DMAAIEYRGL NAVTNFDLSR YIKWLRPSDQ TNNDNTIINP EPNPNPNPND IHLMPNTKDD TNFTQQQQQI SGCDVTVAAL PHPGGGAATS SAALELLLQS
301: TKLKEMLERR SEVIECPETP PEPDRPRRSF PDDIQTYFDC QEPSSFIEEH DIIFGDLDSL TLPMFQCELI N
001: MFIAVEVSPV MEDITRQSKK TSVENETGDD QSATSVVLKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR YEAHLWDKNS WNETQTKKGR QVYLGAYDEE
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
101: DAAARAYDLA ALKYWGRDTI LNFPLCNYEE DIKEMESQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT YATQEEAAIA
201: YDIAAIEYRG LNAVTNFDIS RYLKLPVPEN PIDTANNLLE SPHSDLSPFI KPNHESDLSQ SQSSSEDNDD RKTKLLKSSP LVAEEVIGPS TPPEIAPPRR
301: SFPEDIQTYF GCQNSGKLTA EEDDVIFGDL DSFLTPDFYS ELNDC
Arabidopsis Description
ADAPAP2-like ethylene-responsive transcription factor At1g16060 [Source:UniProtKB/Swiss-Prot;Acc:Q94AN4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.