Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041881 | Potato | nucleus | 71.49 | 94.53 |
| CDY68823 | Canola | nucleus | 24.96 | 49.85 |
| AT5G17430.1 | Thale cress | nucleus | 41.21 | 47.77 |
| Bra013978.1-P | Field mustard | nucleus | 40.47 | 47.32 |
| CDX85454 | Canola | nucleus | 39.44 | 46.92 |
| CDY55941 | Canola | nucleus | 38.4 | 46.59 |
| Solyc11g061750.1.1 | Tomato | nucleus | 37.67 | 46.53 |
| Solyc07g018290.2.1 | Tomato | nucleus | 32.05 | 46.37 |
| CDY16924 | Canola | nucleus | 25.85 | 46.3 |
| Solyc05g051380.2.1 | Tomato | nucleus | 32.94 | 44.51 |
| Os11t0295900-01 | Rice | nucleus | 36.48 | 44.19 |
| Bra023617.1-P | Field mustard | nucleus | 34.56 | 43.66 |
| KRH00957 | Soybean | nucleus | 45.05 | 43.02 |
| Solyc11g010710.1.1 | Tomato | nucleus | 33.97 | 42.36 |
| Solyc06g068570.2.1 | Tomato | nucleus | 19.2 | 41.27 |
| Solyc03g117720.2.1 | Tomato | nucleus, plastid | 21.12 | 38.54 |
| Solyc02g092050.2.1 | Tomato | nucleus | 36.63 | 38.39 |
| Solyc12g010490.1.1 | Tomato | plastid | 20.38 | 37.91 |
| Solyc04g077490.2.1 | Tomato | nucleus | 35.6 | 36.96 |
| Solyc06g066390.1.1 | Tomato | nucleus | 21.57 | 36.05 |
| Solyc08g076380.1.1 | Tomato | nucleus | 20.83 | 32.41 |
| Solyc01g096860.1.1 | Tomato | nucleus | 20.97 | 32.05 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:K4D5B6 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR32467 |
| PANTHER:PTHR32467:SF47 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc11g008560.1 | EnsemblPlants:Solyc11g008560.1.1 | UniParc:UPI000276AA4A |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:2751173..2756165
Molecular Weight (calculated)
75244.4 Da
IEP (calculated)
6.754
GRAVY (calculated)
-0.818
Length
677 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSMNNWLG FSLSPHEEVL TSQQSSHQEC FDLLTSHHHQ QHHDQSTVVL PSLNVVPHDN TPFGIFEAFN RNHHQSQDWN SHDTNYKTTS NMSMLMGTSC
101: NSQHLENNQE PPKLENFLGI GEQKLQQVCN NNNNNNNNNN YYNIYCSTPN NISENNANNI IGLSMIKNWL RNNPNSTTTT TTTPSSLQDD KKEGDVVGVA
201: GGGGNGNNAR SLSLSMSMGG DGGGDNSCSS ENNKQEIVSG NNDGQISGAI VVPKKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV
301: YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS
401: TQEEAAEAYD IAAIKFRGLN AVTNFEINRY DVKSILESST LPIGGAAKRL KDVEQAEIAL DYQRASQENI GTTHLMNGSM SAYGAGHCWP NITLQQAQPL
501: SAMHYSNPYN SQQRLWCKQE VQDHDLTSQN FQDFQLGNAH NYLMGLDNSS SSSMEQNNVT YHQGVGYASN NNNHHGGGGF VLPHLNGSSS YGGENDNEVK
601: QLQLGTHENI FGNYYHSQPA TSNDSIKVSN TLYDHQESVC NSNNWMSTAV PMALASRTST AAICHGVAPT FTMWNDS
101: NSQHLENNQE PPKLENFLGI GEQKLQQVCN NNNNNNNNNN YYNIYCSTPN NISENNANNI IGLSMIKNWL RNNPNSTTTT TTTPSSLQDD KKEGDVVGVA
201: GGGGNGNNAR SLSLSMSMGG DGGGDNSCSS ENNKQEIVSG NNDGQISGAI VVPKKSIDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRKGRQV
301: YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS
401: TQEEAAEAYD IAAIKFRGLN AVTNFEINRY DVKSILESST LPIGGAAKRL KDVEQAEIAL DYQRASQENI GTTHLMNGSM SAYGAGHCWP NITLQQAQPL
501: SAMHYSNPYN SQQRLWCKQE VQDHDLTSQN FQDFQLGNAH NYLMGLDNSS SSSMEQNNVT YHQGVGYASN NNNHHGGGGF VLPHLNGSSS YGGENDNEVK
601: QLQLGTHENI FGNYYHSQPA TSNDSIKVSN TLYDHQESVC NSNNWMSTAV PMALASRTST AAICHGVAPT FTMWNDS
001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT
Arabidopsis Description
BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.