CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16924	Canola	nucleus	97.94	87.83
Bra013978.1-P	Field mustard	nucleus	98.53	57.69
AT5G17430.1	Thale cress	nucleus	83.48	48.46
CDX85454	Canola	nucleus	79.94	47.63
CDY55941	Canola	nucleus	74.34	45.16
CDX72655	Canola	endoplasmic reticulum, golgi	38.05	38.62
CDX78387	Canola	nucleus	42.48	35.82
CDY33356	Canola	nucleus	19.76	34.9
CDX97022	Canola	nucleus	41.0	33.99
CDY18032	Canola	nucleus	28.91	33.79
PGSC0003DMT400041881	Potato	nucleus	50.15	33.2
CDX88560	Canola	nucleus	29.2	32.04
CDX87360	Canola	nucleus	29.2	31.53
CDY35066	Canola	nucleus	29.2	30.0
CDY14577	Canola	nucleus	38.64	28.85
CDY29623	Canola	nucleus	46.9	28.29
CDY06387	Canola	nucleus	46.61	28.21
CDY68782	Canola	nucleus	26.84	28.09
CDY35571	Canola	nucleus	46.61	28.06
Os11t0295900-01	Rice	nucleus	45.72	27.73
CDY57915	Canola	nucleus	46.02	27.66
CDY72251	Canola	nucleus	26.25	27.3
CDY72154	Canola	nucleus	26.25	27.05
CDY19597	Canola	nucleus	46.61	26.87
CDX82142	Canola	nucleus	35.99	26.7
CDY49856	Canola	nucleus	35.69	26.48
CDY42263	Canola	nucleus	41.59	25.68
CDY08784	Canola	nucleus	38.64	25.64
CDY47943	Canola	nucleus	41.89	25.59
CDY40102	Canola	nucleus	41.89	25.49
KRH00957	Soybean	nucleus	52.8	25.25
CDX69826	Canola	nucleus	41.3	25.0
Solyc11g008560.1.1	Tomato	nucleus	49.85	24.96
CDX85757	Canola	nucleus	41.89	24.52
CDX73488	Canola	nucleus	28.91	23.73
CDX78230	Canola	plastid	28.61	23.37
CDX75673	Canola	nucleus	37.76	23.36
CDX67595	Canola	plastid	28.61	23.32
CDX69324	Canola	nucleus	38.05	23.24
CDY50260	Canola	nucleus	37.76	22.86
CDY44027	Canola	nucleus	37.46	22.72
CDY71263	Canola	nucleus	0.88	0.92

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078JMU7	UniProt:A0A078JMU7	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY68823	ProteinID:CDY68823	ProteinID:CDY68823.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00080379001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EF170B	SEG:seg	:	:	:

Description

BnaA10g29740DBnaA10g29740D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JMU7]

Coordinates

chrLK038078:-:3334..4908

Molecular Weight (calculated)

37792.5 Da

IEP (calculated)

6.391

GRAVY (calculated)

-0.708

Length

339 amino acids

Sequence
(BLAST)

001: LLFDHAGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEIEEMKHM TRQEYVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL
101: GTFGTQEEAA EAYDIAAIKF RGLTAVTNFD MNRYNVKAIL ESPTLPIGSA AKRLKEANRP VPSMMMISNN VSESENNASG WQNAAVQHHQ GVDLSLLQQH
201: QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM TNIDHQSSVS DDSVTVCGNV VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ
301: HSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.