Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40102 | Canola | nucleus | 94.3 | 98.03 |
| Bra028584.1-P | Field mustard | nucleus | 95.16 | 97.87 |
| CDX69826 | Canola | nucleus | 81.87 | 84.64 |
| CDX97022 | Canola | nucleus | 59.59 | 84.35 |
| AT5G10510.3 | Thale cress | nucleus | 87.39 | 83.77 |
| CDX78387 | Canola | nucleus | 57.51 | 82.84 |
| VIT_00s0772g00020.t01 | Wine grape | nucleus | 52.68 | 66.59 |
| VIT_00s1291g00010.t01 | Wine grape | nucleus | 58.55 | 66.08 |
| CDY14577 | Canola | nucleus | 50.43 | 64.32 |
| KRH39470 | Soybean | nucleus | 56.13 | 63.48 |
| KRH74476 | Soybean | nucleus | 55.79 | 63.33 |
| Solyc05g051380.2.1 | Tomato | nucleus | 50.95 | 58.88 |
| CDY08784 | Canola | nucleus | 50.43 | 57.14 |
| CDY68782 | Canola | nucleus | 27.81 | 49.69 |
| GSMUA_Achr1P24940_001 | Banana | nucleus | 28.84 | 49.55 |
| CDY33356 | Canola | nucleus | 16.06 | 48.44 |
| CDY72154 | Canola | nucleus | 26.94 | 47.42 |
| CDY72251 | Canola | nucleus | 26.42 | 46.93 |
| CDX72655 | Canola | endoplasmic reticulum, golgi | 26.94 | 46.71 |
| CDY18032 | Canola | nucleus | 23.14 | 46.21 |
| HORVU4Hr1G052880.2 | Barley | nucleus | 16.93 | 46.01 |
| TraesCS4D01G182100.1 | Wheat | nucleus | 29.19 | 44.95 |
| TraesCS4B01G180600.1 | Wheat | nucleus | 29.02 | 44.8 |
| TraesCS4A01G123800.1 | Wheat | nucleus | 28.84 | 44.18 |
| Os03t0313100-01 | Rice | extracellular, nucleus | 31.43 | 42.23 |
| CDY68823 | Canola | nucleus | 24.52 | 41.89 |
| KXG39508 | Sorghum | extracellular, nucleus | 30.57 | 41.45 |
| Zm00001d028919_P001 | Maize | extracellular, nucleus | 30.4 | 41.41 |
| CDX88560 | Canola | nucleus | 21.07 | 39.48 |
| CDY35066 | Canola | nucleus | 22.45 | 39.39 |
| CDX87360 | Canola | nucleus | 21.24 | 39.17 |
| CDX85454 | Canola | nucleus | 38.0 | 38.66 |
| CDY16924 | Canola | nucleus | 25.22 | 38.62 |
| CDY55941 | Canola | nucleus | 36.96 | 38.35 |
| CDY06387 | Canola | nucleus | 36.44 | 37.68 |
| CDY29623 | Canola | nucleus | 36.44 | 37.54 |
| CDX82142 | Canola | nucleus | 29.53 | 37.42 |
| CDY57915 | Canola | nucleus | 36.44 | 37.41 |
| CDY35571 | Canola | nucleus | 36.27 | 37.3 |
| CDY49856 | Canola | nucleus | 29.36 | 37.2 |
| CDY19597 | Canola | nucleus | 36.61 | 36.05 |
| CDY42263 | Canola | nucleus | 33.68 | 35.52 |
| CDY47943 | Canola | nucleus | 33.85 | 35.32 |
| CDX75673 | Canola | nucleus | 31.78 | 33.58 |
| CDX69324 | Canola | nucleus | 31.26 | 32.61 |
| CDY44027 | Canola | nucleus | 31.43 | 32.56 |
| CDY50260 | Canola | nucleus | 31.26 | 32.32 |
| GSMUA_Achr11P... | Banana | nucleus | 29.88 | 31.34 |
| CDX73488 | Canola | nucleus | 22.28 | 31.23 |
| PGSC0003DMT400037835 | Potato | nucleus | 27.98 | 31.03 |
| CDX78230 | Canola | plastid | 22.11 | 30.84 |
| CDX67595 | Canola | plastid | 21.42 | 29.81 |
| CDY71263 | Canola | nucleus | 11.23 | 19.94 |
Protein Annotations
| MapMan:15.5.7.3 | Gene3D:3.30.730.10 | GO:A0A078D9K7 | InterPro:AP2-like_transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDX85757 | ProteinID:CDX85757 | ProteinID:CDX85757.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00143511001 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PFscan:PS51032 | PANTHER:PTHR32467 | PANTHER:PTHR32467:SF33 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI0004EF0956 | SEG:seg | : | : | : |
Description
BnaA02g00560D
Coordinates
chrLK031842:-:1557048..1560832
Molecular Weight (calculated)
65277.3 Da
IEP (calculated)
6.951
GRAVY (calculated)
-0.749
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPMTNWLTF SLSPMDMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE AQIAASMADS TILTTFVDPQ THSHNHIPKL EDFLGEVRYS
101: DNSQTETQDS SSLTHIYDPR HHQNQNQTGF YSDHNHEFKT MAGFQTAFST NSGSEVEDSA SIGRTHLAGE YLGHVVESSG GPELGFHGGA NNGGALSLGV
201: NVNNSNHRTS DDHTQITEHH YRGNNNGERI NNEKMVSEKE KPVVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQA
301: KVFFFNLAIL LTRFINMIFF VNDSGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK ELEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKQ QKPILGYQHQ LHHFQQQQQQ QIQSSPNHSS
501: INFAQSQMIP CGIPFEAAAL YHHQQQQQQQ QQQNFFQHFP ANVQASDSTG SNNNSNVQGS MGLMTPNQAE FFLWPNQSY
101: DNSQTETQDS SSLTHIYDPR HHQNQNQTGF YSDHNHEFKT MAGFQTAFST NSGSEVEDSA SIGRTHLAGE YLGHVVESSG GPELGFHGGA NNGGALSLGV
201: NVNNSNHRTS DDHTQITEHH YRGNNNGERI NNEKMVSEKE KPVVAVETSD CSNKKIADTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQA
301: KVFFFNLAIL LTRFINMIFF VNDSGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK ELEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKQ QKPILGYQHQ LHHFQQQQQQ QIQSSPNHSS
501: INFAQSQMIP CGIPFEAAAL YHHQQQQQQQ QQQNFFQHFP ANVQASDSTG SNNNSNVQGS MGLMTPNQAE FFLWPNQSY
001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVFYSFFGMC YLIWGCILAL LKINSGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ
401: GRWQARIGRV AGNKDLYLGT FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ
501: QQQLQLQSSP NHSSINFALC PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP
601: NQSY
Arabidopsis Description
AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.