CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85454	Canola	nucleus	93.55	91.74
AT5G17430.1	Thale cress	nucleus	78.49	75.0
CDY68823	Canola	nucleus	45.16	74.34
CDY16924	Canola	nucleus	46.95	69.31
CDY33356	Canola	nucleus	17.74	51.56
CDY68782	Canola	nucleus	28.85	49.69
CDY72251	Canola	nucleus	28.67	49.08
CDY72154	Canola	nucleus	28.85	48.94
CDY18032	Canola	nucleus	25.27	48.62
CDX72655	Canola	endoplasmic reticulum, golgi	28.49	47.6
CDX78387	Canola	nucleus	33.15	46.02
CDX97022	Canola	nucleus	33.33	45.48
CDY14577	Canola	nucleus	35.84	44.05
CDX88560	Canola	nucleus	23.3	42.07
CDX87360	Canola	nucleus	23.3	41.4
PGSC0003DMT400041881	Potato	nucleus	37.81	41.21
CDY49856	Canola	nucleus	33.51	40.92
CDX82142	Canola	nucleus	33.33	40.7
CDY35066	Canola	nucleus	23.3	39.39
Os11t0295900-01	Rice	nucleus	39.43	39.36
CDY29623	Canola	nucleus	39.61	39.32
CDY08784	Canola	nucleus	35.84	39.14
CDY35571	Canola	nucleus	39.25	38.9
CDY57915	Canola	nucleus	39.07	38.65
CDY40102	Canola	nucleus	38.35	38.42
Solyc11g008560.1.1	Tomato	nucleus	46.59	38.4
CDY06387	Canola	nucleus	38.17	38.04
CDX69826	Canola	nucleus	37.99	37.86
CDY42263	Canola	nucleus	36.74	37.34
CDX85757	Canola	nucleus	38.35	36.96
KRH00957	Soybean	nucleus	46.59	36.67
CDY47943	Canola	nucleus	36.38	36.58
CDY19597	Canola	nucleus	38.53	36.56
CDX75673	Canola	nucleus	34.77	35.4
CDX69324	Canola	nucleus	34.59	34.77
CDY44027	Canola	nucleus	34.05	33.99
CDY50260	Canola	nucleus	34.05	33.93
CDX73488	Canola	nucleus	22.58	30.51
CDX78230	Canola	plastid	22.4	30.12
CDX67595	Canola	plastid	22.04	29.57
CDY71263	Canola	nucleus	13.26	22.7

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078J1S8	UniProt:A0A078J1S8	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY55941	ProteinID:CDY55941	ProteinID:CDY55941.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00017542001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0004EE337F	SEG:seg	:	:

Description

BnaC02g44180DBnaC02g44180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1S8]

Coordinates

chrLK033441:+:33874..36968

Molecular Weight (calculated)

61917.0 Da

IEP (calculated)

6.260

GRAVY (calculated)

-0.680

Length

558 amino acids

Sequence
(BLAST)

001: MNNNWLGFSL SPSDQNIHRT GVVDSSTATT AVDVTGEYCY DMTAASDESS AVQTSFPSPF GVVLDAFTRD NNSHSRDWDI NGGACNNIHS NDQNEPKLEN
101: FFGRTTTIYN NRENGGDGNG GCGEGDGSGG SLGLSMIKTW LRNQPVSNVD HQDNNGNAAR GLSLSMNSST TCDSNNYNNS NVVVQEKTNV DSVDATPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQARK GRQGGYDKEE KAARAYDLAA LKYWGTTTTT NFPISEYEIE VEDMNHMTRQ EYVASLRRKS
301: SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF GTQEEAAEAY DIAAIKFRGL TAVTNFEMSR YNVKAILDSP SLPIGSSAKR LKEVNHLVPS
401: MMINNVSESE NDASGWQNAA VQHHHGIDLS FLQQHQERYN NYYNGVTARA YFKEEEDQHH FLSNSNSQSL MANIDQHSSA SGDMVTVYGN VDGYGSHQAL
501: AIPVGTSLNC DALAAAEIAY DARNHYYFAQ QQQGGGVFLW EFRIMLALIW AFTVWNNT

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.