Factsheet for PGSC0003DMT400041881

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008560.1.1	Tomato	nucleus	94.53	71.49
PGSC0003DMT400041758	Potato	nucleus	28.12	55.17
CDY68823	Canola	nucleus	33.2	50.15
PGSC0003DMT400035807	Potato	nucleus	29.88	47.22
PGSC0003DMT400055210	Potato	nucleus	26.37	47.2
CDY16924	Canola	nucleus	33.4	45.24
PGSC0003DMT400035354	Potato	nucleus	43.55	40.47
Bra013978.1-P	Field mustard	nucleus	44.34	39.21
Os11t0295900-01	Rice	nucleus	42.38	38.82
AT5G17430.1	Thale cress	nucleus	43.95	38.53
CDX85454	Canola	nucleus	42.38	38.14
CDY55941	Canola	nucleus	41.21	37.81
PGSC0003DMT400087745	Potato	nucleus	20.31	35.37
KRH00957	Soybean	nucleus	48.83	35.26
Bra023617.1-P	Field mustard	nucleus	36.52	34.89
PGSC0003DMT400006170	Potato	nucleus	26.95	33.99
PGSC0003DMT400012588	Potato	nucleus	39.65	31.09
PGSC0003DMT400037835	Potato	nucleus	31.64	31.03
PGSC0003DMT400070735	Potato	nucleus	25.78	30.41

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:M1BC69	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400016252	PGSC:PGSC0003DMG400016252	EnsemblPlants:PGSC0003DMT400041881
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002961DDA	SEG:seg	:	:	:	:

Description

Protein AINTEGUMENTA [Source:PGSC_GENE;Acc:PGSC0003DMG400016252]

Coordinates

chr11:-:3323492..3326890

Molecular Weight (calculated)

56406.9 Da

IEP (calculated)

7.474

GRAVY (calculated)

-0.807

Length

512 amino acids

Sequence
(BLAST)

001: MIKNWLRNNP NSTTTTTTTP SLLQDDKKEG DVVGVAGGGS SGTNAQSLSL SMSTGGDGGG ENSCSSENKQ EIVNGNNGST IDGQISGAIV APKKSIDTFG
101: QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQTRKGRQGG YDKEEKAARA YDLAALKYWG PTTTTNFPIS NYEKELEEMK NMTRQEYVAS LRRKSSGFSR
201: GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAGAYDIAAI KFRGLNAVTN FEINRYDVKS ILESSTLPIG GAAKRLKDVE QAEIALNYQR
301: ASQENIGTTH LMNGSMSTYG AGHCWPNITL QQAQPLSAMH YNNPYNSQQR LWCKQEVQDH DLTSQNFQDF QLGNAHNYLM GLDNSSSSSM EQNNVTYHQG
401: VGYASNNNNH HGGGGFVLPQ LNGSSYGGEN DNEVKQLQLG THENIFGNYY HSQPTTSNDS VKVSNTLYDH QESACNNNNW MSTDVPMALA SRTSTMAVCH
501: SAAPTFTMWN DS

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.