Factsheet for Bra013978.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68823	Canola	nucleus	57.69	98.53
CDY16924	Canola	nucleus	58.89	90.21
AT5G17430.1	Thale cress	nucleus	83.07	82.36
Bra023617.1-P	Field mustard	nucleus	75.47	81.53
Bra024394.1-P	Field mustard	nucleus	34.89	44.99
PGSC0003DMT400041881	Potato	nucleus	39.21	44.34
Bra035137.1-P	Field mustard	nucleus	23.14	43.51
Bra008040.1-P	Field mustard	nucleus	32.47	42.73
Bra018899.1-P	Field mustard	nucleus	41.11	42.58
Bra030451.1-P	Field mustard	nucleus	40.24	41.31
Os11t0295900-01	Rice	nucleus	39.72	41.14
Bra026082.1-P	Field mustard	nucleus	23.14	40.61
Solyc11g008560.1.1	Tomato	nucleus	47.32	40.47
Bra031234.1-P	Field mustard	nucleus	38.69	40.22
Bra006065.1-P	Field mustard	nucleus	38.34	39.93
Bra028584.1-P	Field mustard	nucleus	38.17	39.25
Bra009026.1-P	Field mustard	nucleus	38.0	38.33
Bra020444.1-P	Field mustard	nucleus	36.96	38.28
KRH00957	Soybean	nucleus	46.46	37.94
Bra011782.1-P	Field mustard	nucleus	34.54	36.7
Bra017852.1-P	Field mustard	nucleus	34.89	36.33
Bra010610.1-P	Field mustard	nucleus	33.51	35.08
Bra007066.1-P	Field mustard	plastid	22.45	31.55
Bra003178.1-P	Field mustard	plastid	21.93	30.75
Bra023921.1-P	Field mustard	nucleus	24.7	30.62

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra013978
EnsemblPlants:Bra013978.1	EnsemblPlants:Bra013978.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DBW8	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00000A06A4	SEG:seg	:	:	:	:

Description

AT5G17430 (E=6e-254) BBM | BBM (BABY BOOM); DNA binding / transcription factor

Coordinates

chrA08:-:4892076..4895274

Molecular Weight (calculated)

64022.1 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.796

Length

579 amino acids

Sequence
(BLAST)

001: MNNNWLGFSL SPYEQNHHRK DVCSSTTTTA VDVAGEYCYD PTAASDESSA IQTSFPSPFG VVLDAFTRDN NSHSRDWDIN GSACNNIHND EQDGPKLENF
101: LGRTTTIYNT NENVGDIDGS GCYGGGDGGG GSLGLSMIKT WLRNQPVDNV DNQENGNGAK GLSLSMNSST SCDNNNYSSN NLVAQGKTID DSVEATPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPMSEY EKEIEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLTAVTNFD MNRYNVKAIL ESPSLPIGSA AKRLKEANRP
401: VPSMMMISNN VSESENNASG WQNAAVQHHQ GVDLSLLQQH QERYNGYYYN GGNLSSESAR ACFKQEDDQH HFLSNTQSLM TNIDHQSSVS DDSVTVCGNV
501: VGYGGYQGFA APVNCDAYAA SEFDYNARNH YYFAQQQQTQ HSPGGDFPAA MTNNVGSNMY YHGEGGGEVA PTFTVWNDN

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.