Factsheet for Bra008040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18032	Canola	nucleus	64.55	97.93
CDY49856	Canola	nucleus	99.09	95.4
CDX82142	Canola	nucleus	97.27	93.65
AT1G72570.1	Thale cress	nucleus	74.32	78.8
Bra035137.1-P	Field mustard	nucleus	26.36	37.66
Bra024394.1-P	Field mustard	nucleus	37.5	36.75
Bra026082.1-P	Field mustard	nucleus	26.14	34.85
Bra017852.1-P	Field mustard	nucleus	43.64	34.53
Bra011782.1-P	Field mustard	nucleus	42.5	34.31
Bra030451.1-P	Field mustard	nucleus	42.95	33.51
Bra010610.1-P	Field mustard	nucleus	42.05	33.45
Bra031234.1-P	Field mustard	nucleus	41.59	32.85
Bra018899.1-P	Field mustard	nucleus	41.36	32.56
Bra013978.1-P	Field mustard	nucleus	42.73	32.47
Bra020444.1-P	Field mustard	nucleus	39.77	31.31
Bra006065.1-P	Field mustard	nucleus	38.86	30.76
Bra028584.1-P	Field mustard	nucleus	38.86	30.37
Bra023617.1-P	Field mustard	nucleus	36.36	29.85
Bra009026.1-P	Field mustard	nucleus	38.18	29.27
Bra007066.1-P	Field mustard	plastid	26.82	28.64
Bra003178.1-P	Field mustard	plastid	26.14	27.84
Bra023921.1-P	Field mustard	nucleus	24.09	22.7

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra008040
EnsemblPlants:Bra008040.1	EnsemblPlants:Bra008040.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CUZ5	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025471B8	SEG:seg	:	:	:	:

Description

AT1G72570 (E=4e-159) | DNA binding / transcription factor

Coordinates

chrA02:+:12779130..12782876

Molecular Weight (calculated)

49637.2 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.847

Length

440 amino acids

Sequence
(BLAST)

001: MNKWLGFSLT PHLRISDRVQ EEDEENYVVT NQQKALMPLN SDGSPFFTDP LTHHPHPVWQ YDINLNHDDH HHHDEEVPKL EDFFSNSHQT ECPPISGNNQ
101: TNVNCTTMLN RLSPPGYLLY EQAVSTPQYS NLDTNLSHDY GGSVSVFKSW LGQGTPTFPV SNTYVSGEGS TSNTSNFSHE ETNYNTSGST LLLTMSHGAA
201: SDLINELNVS VPVEEPVKVD EKRKSLVGKS QAKEPVETRK SVDSLGQRTS QYRGVTKHRW TGRYEAHLWD NSCKKEGQSR RGRQGGYDDE EKAARAYDLA
301: AMKYWGPTTH LNFPLSNYEK EMEELNNMTR QEFVAMLRRN SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG
401: VNAVTNFDIC RYDVKRICSN STIINSDQAK RSPSNSASGQ

Best Arabidopsis Sequence Match ( AT1G72570.1 )
(BLAST)

001: MKKWLGFSLT PPLRICNSEE EELRHDGSDV WRYDINFDHH HHDEDVPKVE DLLSNSHQTE YPINHNQTNV NCTTVVNRLN PPGYLLHDQT VVTPHYPNLD
101: PNLSNDYGGF ERVGSVSVFK SWLEQGTPAF PLSSHYVTEE AGTSNNISHF SNEETGYNTN GSMLSLALSH GACSDLINES NVSARVEEPV KVDEKRKRLV
201: VKPQVKESVP RKSVDSYGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRRGRQVYLG GYDEEEKAAR AYDLAALKYW GPTTHLNFPL SNYEKEIEEL
301: NNMNRQEFVA MLRRNSSGFS RGASVYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT NFDINRYDVK RICSSSTIVD
401: SDQAKHSPTS SGAGH

Arabidopsis Description

AIL1AP2-like ethylene-responsive transcription factor AIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFE1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.