Factsheet for Bra018899.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra026048.1-P
Bra026720.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51190.1	Bra026048.1-P	AT1G16490.1	21245844
AT1G51190.1	Bra026720.1-P	AT1G16490.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72154	Canola	nucleus	57.96	98.48
CDY72251	Canola	nucleus	55.46	95.09
AT1G51190.1	Thale cress	nucleus	92.13	90.67
Bra030451.1-P	Field mustard	nucleus	89.62	88.83
Bra031234.1-P	Field mustard	nucleus	77.1	77.38
Bra023921.1-P	Field mustard	nucleus	62.08	74.3
VIT_06s0004g01800.t01	Wine grape	nucleus	69.23	70.36
Solyc11g061750.1.1	Tomato	nucleus	68.16	69.53
PGSC0003DMT400035354	Potato	nucleus	67.98	68.97
KRH24688	Soybean	nucleus	67.44	68.17
KRH29690	Soybean	nucleus	67.44	63.04
Bra024394.1-P	Field mustard	nucleus	37.03	46.1
Bra008040.1-P	Field mustard	nucleus	32.56	41.36
Bra013978.1-P	Field mustard	nucleus	42.58	41.11
Bra035137.1-P	Field mustard	nucleus	22.0	39.94
GSMUA_Achr2P05880_001	Banana	nucleus	40.61	39.69
Bra026082.1-P	Field mustard	nucleus	23.08	39.09
Bra020444.1-P	Field mustard	nucleus	38.82	38.82
Os02t0614300-01	Rice	mitochondrion, nucleus	22.18	38.63
Bra006065.1-P	Field mustard	nucleus	38.1	38.31
Bra028584.1-P	Field mustard	nucleus	37.92	37.66
Bra023617.1-P	Field mustard	nucleus	35.78	37.31
HORVU6Hr1G057060.3	Barley	nucleus	43.29	37.12
Bra009026.1-P	Field mustard	nucleus	37.57	36.59
TraesCS6A01G229500.1	Wheat	nucleus	42.75	36.27
TraesCS6B01G252000.1	Wheat	nucleus	42.93	36.25
Bra011782.1-P	Field mustard	nucleus	35.24	36.15
TraesCS6D01G205300.1	Wheat	nucleus	42.58	36.01
Bra017852.1-P	Field mustard	nucleus	35.24	35.43
Zm00001d017207_P001	Maize	nucleus	42.58	35.21
Os04t0504500-01	Rice	nucleus	41.14	34.95
KXG30667	Sorghum	nucleus	42.93	34.78
TraesCS2D01G357600.1	Wheat	nucleus	40.43	34.5
TraesCS2B01G378100.1	Wheat	nucleus	40.61	34.39
HORVU2Hr1G087310.1	Barley	nucleus	40.43	34.29
Bra010610.1-P	Field mustard	nucleus	33.45	33.82
Bra007066.1-P	Field mustard	plastid	24.15	32.77
Bra003178.1-P	Field mustard	plastid	23.79	32.2

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra018899
EnsemblPlants:Bra018899.1	EnsemblPlants:Bra018899.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DQV6	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000253E9FC	SEG:seg	:	:	:	:

Description

AT1G51190 (E=1e-225) PLT2 | PLT2 (PLETHORA 2); transcription factor

Coordinates

chrA06:-:1363653..1367508

Molecular Weight (calculated)

61365.6 Da

IEP (calculated)

6.697

GRAVY (calculated)

-0.711

Length

559 amino acids

Sequence
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQTSHF NLGLVNDNMD NPFQNQEWNM INPHGGGGEG GGVPKVADFL GVGKSEIHQA DHNLVSYNDI HQTNDSDYYF
101: QTNSLLPTVV TCASNTPNNY ELQASAHNLQ SLTLSMGSTG ATAAAAATLK ASPDDISTDN SSSTTNTGGG AIVEATPKRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPSTTT NFPVTNYEKE VEEMKHMTRQ EFVAAIRRKS SGFSRGASMY RGVTRHHQHG
301: RWQARIGRVA GNKDLYLGTF STEEEAAEAY DIAAIKFRGL NAVTNFEINR YDVKAILESN TLPIGGGAAK RLKEAQALES SRKREEMIAL SSNLHQYGAP
401: SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYD SYSYIQTQLH LHQQQTNDYL QSSSHSSQLY NAYLQSNPGM LQGFVSDDNN NNTSGFLGNN
501: GIGIGSTSTV GSSAGDEFST VKVDYDMPPS GGATGYGGWT TGESVQGSNP GGVFTMWNE

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.