Factsheet for TraesCS2B01G378100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G357600.1	Wheat	nucleus	97.73	98.47
HORVU2Hr1G087310.1	Barley	nucleus	97.73	97.88
Os04t0504500-01	Rice	nucleus	71.82	72.04
Os02t0614300-01	Rice	mitochondrion, nucleus	32.58	66.98
Zm00001d017207_P001	Maize	nucleus	67.42	65.83
KXG30667	Sorghum	nucleus	67.88	64.93
TraesCS6B01G252000.1	Wheat	nucleus	64.24	64.05
CDY68782	Canola	nucleus	25.3	51.54
GSMUA_Achr2P05880_001	Banana	nucleus	44.24	51.05
CDY72251	Canola	nucleus	24.24	49.08
CDY72154	Canola	nucleus	24.09	48.33
TraesCS4B01G180600.1	Wheat	nucleus	26.82	47.2
TraesCS7B01G401400.1	Wheat	nucleus	31.52	44.54
VIT_06s0004g01800.t01	Wine grape	nucleus	36.52	43.82
Solyc11g061750.1.1	Tomato	nucleus	36.21	43.61
KRH24688	Soybean	nucleus	36.36	43.4
PGSC0003DMT400035354	Potato	nucleus	36.21	43.38
CDY06387	Canola	nucleus	35.91	42.32
CDY57915	Canola	nucleus	35.91	42.02
Bra031234.1-P	Field mustard	nucleus	35.45	42.01
AT3G20840.1	Thale cress	nucleus	36.21	41.64
AT1G51190.1	Thale cress	nucleus	35.3	41.02
CDY35571	Canola	nucleus	34.85	40.85
Bra030451.1-P	Field mustard	nucleus	34.85	40.78
Bra018899.1-P	Field mustard	nucleus	34.39	40.61
CDY29623	Canola	nucleus	34.55	40.57
CDY19597	Canola	nucleus	35.61	39.97
KRH29690	Soybean	nucleus	36.06	39.8
TraesCS4B01G292900.1	Wheat	nucleus	31.82	39.77
TraesCS2B01G534000.1	Wheat	nucleus	29.09	39.75
TraesCS3B01G427300.1	Wheat	nucleus, plastid	42.42	37.38
TraesCS2B01G268100.2	Wheat	nucleus	32.27	35.5
TraesCS5B01G410200.1	Wheat	nucleus	33.48	35.19
TraesCS6B01G153800.1	Wheat	nucleus	17.88	35.01
TraesCS4B01G235900.2	Wheat	nucleus	32.58	34.02
TraesCS4B01G136400.1	Wheat	plastid	16.97	33.94
TraesCS5B01G220400.2	Wheat	nucleus	20.3	33.75
Bra023921.1-P	Field mustard	nucleus	23.48	33.19
TraesCS3B01G368400.1	Wheat	plastid	18.64	31.95

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2B01G378100	EnsemblPlants:TraesCS2B01G378100.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:541006277..541010150

Molecular Weight (calculated)

69656.1 Da

IEP (calculated)

6.548

GRAVY (calculated)

-0.529

Length

660 amino acids

Sequence
(BLAST)

001: MASANNWLGF SLSGQGSHPQ PHQNGSPAAA AAIDVSGGGD FYGLQGQTAP DAHLGMSGLR ADANYGVMDA FNGGTQETQD WAMRGLNYHG GSSELSMLVG
101: SSGGRMTVDD GEAPKLEDFL GGSSFSDVQD HAGGYLFSSG SAMGSSAAAG SHGVDGRGGS TIELSMIKTW LRNDNNQAQH DQEMSADASA TSYACSGAPG
201: STGNGVGVAS SRGQGLALSM SMGSNSHPQM PVVPAAVGTE STSSENKRVD SPSAGTADAV QRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG
301: QTRKGKQVYL GGYDKEDKAA RAYDLAALKY WGTTTTTNIP ISTYEKEIEE MKHMTRQEYI AYLRRNSSGF SRGASKYRGV TRHHQQGRWQ ARIGRVAGNK
401: DLYLGTFTTE EEAAEAYDIA AIKFRGLNAV TNFEMSRYDV KSILEGSTLP VGGAARRLKE AAELAEAGVW RAEDGSIVSH LQADAMAGYH HGWPTSIAFG
501: SHQQQQSAAQ LALHYPYGVG GHARGWCKPE QDAVIAAAHG GQDIQELHLG SGGSTHNFFQ PASRAAVYGN GGGGAWYQGL GGNAYMMPVG TVVDADQGHS
601: GSTATTEEGR LVGYGAEAGV DPYAAMRRAY ELSQGSSSVS VAKVADGYSN NWSSPFNGMG

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.