Factsheet for TraesCS4B01G136400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G131200.1	Wheat	plastid	93.33	86.76
TraesCS4A01G181300.1	Wheat	plastid	94.55	86.43
Os01t0813300-00	Rice	nucleus	26.97	70.08
TraesCS3B01G368400.1	Wheat	plastid	68.18	58.44
KXG33588	Sorghum	plastid	55.76	46.12
Zm00001d043116_P002	Maize	nucleus	54.85	39.18
GSMUA_Achr3P09410_001	Banana	nucleus	37.88	34.92
Bra007066.1-P	Field mustard	plastid	39.7	31.8
CDX73488	Canola	nucleus	39.7	31.72
CDX78230	Canola	plastid	39.7	31.57
TraesCS5B01G220400.2	Wheat	nucleus	37.88	31.49
VIT_13s0047g00340.t01	Wine grape	plastid	34.85	31.0
KRH13193	Soybean	nucleus	38.18	30.58
TraesCS6B01G153800.1	Wheat	nucleus	31.21	30.56
Bra003178.1-P	Field mustard	plastid	37.88	30.27
AT3G54320.1	Thale cress	plastid	40.0	30.14
CDX67595	Canola	plastid	37.88	30.05
KRH44733	Soybean	nucleus	38.18	29.58
PGSC0003DMT400070735	Potato	nucleus	38.79	29.49
Solyc01g096860.1.1	Tomato	nucleus	38.79	28.89
TraesCS4B01G180600.1	Wheat	nucleus	30.91	27.2
TraesCS7B01G401400.1	Wheat	nucleus	32.42	22.91
TraesCS2B01G534000.1	Wheat	nucleus	31.82	21.74
TraesCS4B01G292900.1	Wheat	nucleus	33.03	20.64
TraesCS2B01G268100.2	Wheat	nucleus	34.24	18.83
TraesCS5B01G410200.1	Wheat	nucleus	34.24	17.99
TraesCS6B01G252000.1	Wheat	nucleus	34.85	17.37
TraesCS4B01G235900.2	Wheat	nucleus	32.73	17.09
TraesCS2B01G378100.1	Wheat	nucleus	33.94	16.97
TraesCS3B01G427300.1	Wheat	nucleus, plastid	34.55	15.22

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G136400	EnsemblPlants:TraesCS4B01G136400.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:179847896..179850219

Molecular Weight (calculated)

36689.1 Da

IEP (calculated)

7.402

GRAVY (calculated)

-0.540

Length

330 amino acids

Sequence
(BLAST)

001: MTNKKPTWSS SASACSRGSR IGLSCAVTNQ KKKKRARSDA VVVPARGSSV YRGVSRHCAS GKYEVHLWDR HFRSTVQNRR GRQGAYDTEE AAARTYDLAA
101: LKYWGAQCGG LLLNFPVDTY KDELERMQRV TREEYVAILR RDSSGFTRGA SKYRGVAKHH KKGRWEARIG CGSGSGGGSG SKRYLYLGIF ITQEEAARAY
201: DLAAIQLRGL AAVTNFDVHS YYVDQQLQAP LCKVDLDPEP AGQLLLPKVE PKEEELEPVP VLRDDVDDVD CAIAEVLQAL CMDRADFEAR YPPRDAPGWW
301: PSDDDLRELP AYVGFEDDIE SVLFDAPSAA

Best Arabidopsis Sequence Match ( AT3G54320.1 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLF QGLFVGSE

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.