Factsheet for Solyc01g096860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070735	Potato	nucleus	94.13	96.08
Os01t0813300-00	Rice	nucleus	21.67	75.59
GSMUA_Achr8P09350_001	Banana	plastid	41.76	51.1
CDX73488	Canola	nucleus	47.63	51.09
Bra007066.1-P	Field mustard	plastid	46.95	50.49
CDX78230	Canola	plastid	47.18	50.36
Bra003178.1-P	Field mustard	plastid	46.5	49.88
VIT_13s0047g00340.t01	Wine grape	plastid	41.76	49.87
CDX67595	Canola	plastid	46.73	49.76
Solyc06g068570.2.1	Tomato	nucleus	33.86	47.62
AT3G54320.1	Thale cress	plastid	46.28	46.8
Zm00001d005016_P005	Maize	plastid	41.99	46.73
EES09182	Sorghum	nucleus	43.57	45.95
KRH13193	Soybean	nucleus	42.21	45.39
Solyc12g010490.1.1	Tomato	plastid	36.34	44.23
Solyc03g117720.2.1	Tomato	nucleus, plastid	36.79	43.94
TraesCS5D01G150500.1	Wheat	plastid	42.21	43.79
TraesCS5A01G141700.1	Wheat	plastid	41.76	43.22
KRH44733	Soybean	nucleus	41.53	43.19
HORVU5Hr1G045290.10	Barley	nucleus, plastid	41.76	42.43
Os12t0126300-00	Rice	nucleus	42.66	42.38
GSMUA_Achr3P03630_001	Banana	plastid	39.05	41.79
Solyc06g066390.1.1	Tomato	nucleus	36.34	39.75
GSMUA_Achr3P09410_001	Banana	nucleus	31.38	38.83
TraesCS4B01G136400.1	Wheat	plastid	28.89	38.79
Zm00001d052405_P002	Maize	plastid	37.02	37.7
KXG33588	Sorghum	plastid	33.63	37.34
TraesCS4D01G131200.1	Wheat	plastid	28.44	35.49
TraesCS4A01G181300.1	Wheat	plastid	28.67	35.18
Solyc08g076380.1.1	Tomato	nucleus	34.54	35.17
TraesCS3B01G368400.1	Wheat	plastid	30.25	34.81
TraesCS3D01G330400.1	Wheat	plastid	28.67	33.69
Zm00001d043116_P002	Maize	nucleus	33.86	32.47
Solyc07g018290.2.1	Tomato	nucleus	30.93	29.27
Solyc05g051380.2.1	Tomato	nucleus	28.89	25.55
Solyc11g010710.1.1	Tomato	nucleus	30.7	25.05
Solyc11g061750.1.1	Tomato	nucleus	30.7	24.82
Solyc02g092050.2.1	Tomato	nucleus	32.05	21.98
Solyc04g077490.2.1	Tomato	nucleus	31.83	21.63
Solyc11g008560.1.1	Tomato	nucleus	32.05	20.97

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005975	GO:GO:0006091	GO:GO:0006109
GO:GO:0006110	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006629	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008610	GO:GO:0009056	GO:GO:0009058	GO:GO:0009744
GO:GO:0009987	GO:GO:0019432	GO:GO:1901959	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4B074
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PFscan:PS51257	PANTHER:PTHR32467	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc01g096860.1	EnsemblPlants:Solyc01g096860.1.1	UniParc:UPI0002767C4E	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:87854038..87857788

Molecular Weight (calculated)

50619.6 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.817

Length

443 amino acids

Sequence
(BLAST)

001: MKKSPSFSCS SSSSSSSCIE QIHEETEKLN LKPKPKPKPK PKPRLKRASR AKKIVNADSP SNNSSTARRS SIFRGVTRHR WTGRYEAHLW DKSTWNSIQK
101: KKGRQIYLGA YDSEEAAART YDLAALKYWG PTTLLNFPVE RYSKEFEEMQ RLTKEEYLAS LRRMSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVYGNKYL
201: YLGTYSTQEE AAAAYDMAAI EYRGPNAVTN FDISRYADHL KKLREPDLLT KEENTESSAE VQSSEVIEQY QPVQQEESQF DYQLAELAAE PIVVPKLEFT
301: PALDFDEVTQ PKVLKLEFAA DLINAKDHEE EEDYPWMNMY LDDTFDSLPV SDFSLDKPTD LMDLFNDNSF DNNIDFDFYE QSSENEFNLN VFSDSMIIDG
401: IEADNEEVRN NLSISPTSSS SMSRTTSISN DMKDDGGLAS STM

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.