Factsheet for Solyc06g066390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076380.1.1	Tomato	nucleus	62.96	58.62
VIT_14s0108g00050.t01	Wine grape	nucleus	57.53	57.67
KRH40131	Soybean	nucleus	55.56	57.4
KRH01131	Soybean	nucleus	55.06	56.89
Os06t0145700-00	Rice	nucleus	41.48	52.17
TraesCS7A01G095100.1	Wheat	nucleus	47.41	47.06
HORVU1Hr1G080350.3	Barley	nucleus	46.91	46.91
TraesCS7D01G091100.1	Wheat	nucleus	47.41	46.83
TraesCS4A01G395400.1	Wheat	nucleus	47.16	46.7
TraesCS1D01G362500.1	Wheat	nucleus	47.16	46.47
TraesCS1A01G357800.1	Wheat	nucleus	47.16	46.25
Zm00001d011134_P001	Maize	nucleus	47.9	46.19
Os05t0536250-00	Rice	nucleus	47.65	44.78
Solyc06g068570.2.1	Tomato	nucleus	34.57	44.44
EES19874	Sorghum	nucleus	48.15	44.02
Solyc12g010490.1.1	Tomato	plastid	39.51	43.96
Solyc03g117720.2.1	Tomato	nucleus, plastid	39.75	43.4
EER89186	Sorghum	nucleus	47.65	39.55
Zm00001d045378_P001	Maize	nucleus	47.9	39.51
Solyc01g096860.1.1	Tomato	nucleus	39.75	36.34
Solyc07g018290.2.1	Tomato	nucleus	32.59	28.21
Solyc05g051380.2.1	Tomato	nucleus	30.37	24.55
Solyc11g010710.1.1	Tomato	nucleus	30.86	23.02
Solyc11g061750.1.1	Tomato	nucleus	31.11	22.99
Solyc11g008560.1.1	Tomato	nucleus	36.05	21.57
Solyc02g092050.2.1	Tomato	nucleus	33.33	20.9
Solyc04g077490.2.1	Tomato	nucleus	33.33	20.71

Protein Annotations

MapMan:15.5.7.3	MapMan:26.9.2.2	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:K4C7R5	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF73	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc06g066390.1	EnsemblPlants:Solyc06g066390.1.1
UniParc:UPI0002765D9A	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:41679278..41681022

Molecular Weight (calculated)

46382.5 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.835

Length

405 amino acids

Sequence
(BLAST)

001: MDLNKDSYLV KSEMSSPGKR SMSMVDYGIP ETTKRVKRRR RSPPAVGVVN DNIGQQAEQQ KMDSSKVDQN IAHTPTVKRS SRFRGVSRHR WTGRYEAHLW
101: DKGSWNVTQK KKGKQVYLGA YDEEESAARA YDLAAIKYWG TSTFINFPIS DYEKEIEIMQ TVTKEEYLAS LRRRSSGFAR GVSKYRGVAR HHHNGRWEAR
201: IGRVFGNKYL YLGTYSTQEE AARAYDIAAI EYRGINAVTN FDLSTYIRWL KPGVNTQMAF QELRSENQAI QTNTNDIINP INDPQFTFGS NYFSTTRETL
301: PPIPQSQEPI ERKMPLSPCN KPPSPTALSL LLRSSMYREL VEKNSTTIAN EKDDPNMKNK QQVNTEDEFV FYRSDKLPAL ESMDEGTTSS HLGDRAGQSF
401: WDVMP

Best Arabidopsis Sequence Match ( AT3G54320.3 )
(BLAST)

001: MKKRLTTSTC SSSPSSSVSS STTTSSPIQS EAPRPKRAKR AKKSSPSGDK SHNPTSPAST RRSSIYRGVT RHRWTGRFEA HLWDKSSWNS IQNKKGKQVY
101: LGAYDSEEAA AHTYDLAALK YWGPDTILNF PAETYTKELE EMQRVTKEEY LASLRRQSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYNT
201: QEEAAAAYDM AAIEYRGANA VTNFDISNYI DRLKKKGVFP FPVNQANHQE GILVEAKQEV ETREAKEEPR EEVKQQYVEE PPQEEEEKEE EKAEQQEAEI
301: VGYSEEAAVV NCCIDSSTIM EMDRCGDNNE LAWNFCMMDT GFSPFLTDQN LANENPIEYP ELFNELAFED NIDFMFDDGK HECLNLENLD CCVVGRESPP
401: SSSSPLSCLS TDSASSTTTT TTSVSCNYLV

Arabidopsis Description

WRI1Integrase-type DNA-binding superfamily protein [Source:TAIR;Acc:AT3G54320]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.