Factsheet for Solyc11g010710.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	cytosol, nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041758	Potato	nucleus	46.04	95.79
Solyc05g051380.2.1	Tomato	nucleus	63.17	68.46
VIT_00s0772g00020.t01	Wine grape	nucleus	55.62	65.94
KRH39470	Soybean	nucleus	61.51	65.23
KRH74476	Soybean	nucleus	61.14	65.1
VIT_00s1291g00010.t01	Wine grape	nucleus	61.33	64.91
GSMUA_Achr1P24940_001	Banana	nucleus	32.04	51.63
TraesCS4D01G182100.1	Wheat	nucleus	32.97	47.61
TraesCS4B01G180600.1	Wheat	nucleus	32.78	47.47
HORVU4Hr1G052880.2	Barley	nucleus	18.42	46.95
TraesCS4A01G123800.1	Wheat	nucleus	32.41	46.56
KXG39508	Sorghum	extracellular, nucleus	33.15	42.15
Os03t0313100-01	Rice	extracellular, nucleus	33.33	42.0
Zm00001d028919_P001	Maize	extracellular, nucleus	31.49	40.24
Solyc06g068570.2.1	Tomato	nucleus	23.2	40.0
Solyc07g018290.2.1	Tomato	nucleus	33.89	39.32
Solyc11g061750.1.1	Tomato	nucleus	38.86	38.5
Solyc03g117720.2.1	Tomato	nucleus, plastid	25.97	38.01
Solyc12g010490.1.1	Tomato	plastid	24.13	35.99
Solyc11g008560.1.1	Tomato	nucleus	42.36	33.97
GSMUA_Achr11P...	Banana	nucleus	33.52	32.97
Solyc04g077490.2.1	Tomato	nucleus	37.94	31.6
Solyc02g092050.2.1	Tomato	nucleus	37.38	31.42
Solyc06g066390.1.1	Tomato	nucleus	23.02	30.86
Solyc01g096860.1.1	Tomato	nucleus	25.05	30.7
Solyc08g076380.1.1	Tomato	nucleus	23.02	28.74

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4D5N0	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF33	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc11g010710.1	EnsemblPlants:Solyc11g010710.1.1	UniParc:UPI00027697B7
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:3758647..3764093

Molecular Weight (calculated)

59747.7 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.628

Length

543 amino acids

Sequence
(BLAST)

001: MAPDNNNWLS FSLSSMEMLN STSSHHHQNN SNNNNSSLLH HHHQSNMKFD LASSSADSHQ YYFADNFFPH GWSNPKPQVM YSEAEKEVIG LNINTDSSIF
101: QNFVENAPPK LEDFFGGDSS SLTQDSSSLT HIYENPNGSA VYDNNNYNEH QDFKNITGFQ AFSTNSGSEV DNSVGTEFGT NESCNELSYS QCVAAAVAAA
201: APPLLPTGGG GGALSLAVNA AAATTTNQCS ENEKAMVAVA DSQSCKKISD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR QVYLGGYDKE
301: DKAARAYDLA ALKYWGPTAT TNFPVTNYTK ELEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA
401: YDIAAIKFRG VNAVTNFEMN RYDVEAIMKS SLPVGGTAKR LKLSLESEQK SSSSNNNNQQ QQMTQCNSSN NINFGAMPPV SAIPCGVPFD NTAPAFYHHN
501: FFQYLHPGNA SVPDASNATT TMAAAMPLLP SAADLFIWPH QSY

Best Arabidopsis Sequence Match ( AT5G10510.6 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVYLGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT
401: FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ QQQLQLQSSP NHSSINFALC
501: PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.