Factsheet for Solyc05g051380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g010710.1.1	Tomato	nucleus	68.46	63.17
VIT_00s0772g00020.t01	Wine grape	nucleus	57.48	62.88
VIT_00s1291g00010.t01	Wine grape	nucleus	62.87	61.4
CDX97022	Canola	nucleus	48.3	59.17
CDX78387	Canola	nucleus	46.11	57.46
Bra006065.1-P	Field mustard	nucleus	60.68	54.68
Bra024394.1-P	Field mustard	nucleus	48.3	53.9
CDY14577	Canola	nucleus	48.5	53.52
Bra028584.1-P	Field mustard	nucleus	60.08	53.46
CDX69826	Canola	nucleus	59.48	53.21
AT5G65510.2	Thale cress	nucleus	52.69	53.01
CDY40102	Canola	nucleus	58.88	52.96
Bra009026.1-P	Field mustard	nucleus	59.88	52.26
CDX85757	Canola	nucleus	58.88	50.95
AT5G10510.3	Thale cress	nucleus	60.48	50.17
GSMUA_Achr1P24940_001	Banana	nucleus	32.53	48.37
CDY08784	Canola	nucleus	48.3	47.36
HORVU4Hr1G052880.2	Barley	nucleus	19.56	46.01
TraesCS4D01G182100.1	Wheat	nucleus	34.13	45.48
TraesCS4B01G180600.1	Wheat	nucleus	33.93	45.33
TraesCS4A01G123800.1	Wheat	nucleus	33.73	44.71
Os03t0313100-01	Rice	extracellular, nucleus	35.53	41.3
KXG39508	Sorghum	extracellular, nucleus	33.33	39.11
Solyc06g068570.2.1	Tomato	nucleus	24.55	39.05
Solyc11g061750.1.1	Tomato	nucleus	41.72	38.14
Zm00001d028919_P001	Maize	extracellular, nucleus	32.34	38.12
Solyc03g117720.2.1	Tomato	nucleus, plastid	27.54	37.2
Solyc07g018290.2.1	Tomato	nucleus	34.33	36.75
Solyc12g010490.1.1	Tomato	plastid	26.15	35.99
PGSC0003DMT400037835	Potato	nucleus	34.53	33.14
Solyc11g008560.1.1	Tomato	nucleus	44.51	32.94
GSMUA_Achr11P...	Banana	nucleus	34.73	31.52
Solyc06g066390.1.1	Tomato	nucleus	24.55	30.37
Solyc02g092050.2.1	Tomato	nucleus	38.32	29.72
Solyc04g077490.2.1	Tomato	nucleus	38.12	29.29
Solyc01g096860.1.1	Tomato	nucleus	25.55	28.89
Solyc08g076380.1.1	Tomato	nucleus	24.95	28.74

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	UniProt:K4C1G9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF33	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:Solyc05g051380.2	EnsemblPlants:Solyc05g051380.2.1	UniParc:UPI00027656E4
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:61665626..61670164

Molecular Weight (calculated)

55825.2 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.749

Length

501 amino acids

Sequence
(BLAST)

001: MAPENNNWLS FSLSSMEMLN SSSSSSSMLQ SNAPSAPTHQ YYFADNFYPH GWMNVPKTHE LMYSGDEKQI YHPNVFIDSQ IIHHQHHHHP PPKLEDFFGG
101: ETETQDSSSL THIYDHHHHH GGGAAAGDGG YFNNGQQDVN HNYSIAVGGF QTLPTNSGSE VDDSQVMGSE FATESSNEIY PPIITLGVNN NSNTNSEKAI
201: VTAVNSEGCK KITDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCKREGQA RKGRQGGYDK EDKAARSYDL AALKYWGTTA TTNFPASDYT KEIEEMKHMT
301: KQEFIASLRR KSSGFSRGAS MYRGVTRHHQ QGRWQARIGR VAGNKDLYLG TFATEEEAAE AYDIAAIKFR GLNAVTNFEM NRYDVEAIMK SSLPIGGAAK
401: RLKISLESEQ KQSLNDNYQQ TLHNGVNNSS SNNSINFGAI SPVSAIPCGL PFDANQPYYH HSFFPHLQYS SNDGGASDHT SGTMPLLPPP AEIFIWPHQS
501: Y

Best Arabidopsis Sequence Match ( AT5G10510.6 )
(BLAST)

001: MMAPMTNWLT FSLSPMEMLR SSDQSQFVSY DASSAASSSP YLLDNFYGWS NQKPQEFFKE EAQLAAAASM ADSTILTTFV DPQSHHSQNH IPKLEDFLGD
101: SSSIVRYSDN SQTDTQDSSL TQIYDPRHHH NQTGFYSDHH DFKTMAGFQS AFSTNSGSEV DDSASIGRTH LAGDYLGHVV ESSGPELGFH GGSTGALSLG
201: VNVNNNTNHR NDNDNHYRGN NNGERINNNN NNDNEKTDSE KEKAVVAVET SDCSNKKIAD TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQARKGR
301: QVYLGGYDKE DKAARAYDLA ALKYWNATAT TNFPITNYSK EVEEMKHMTK QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT
401: FATEEEAAEA YDIAAIKFRG INAVTNFEMN RYDVEAIMKS ALPIGGAAKR LKLSLEAAAS SEQKPILGHH QLHHFQQQQQ QQQLQLQSSP NHSSINFALC
501: PNSAVQSQQI IPCGIPFEAA ALYHHHQQQQ QHQQQQQQQN FFQHFPANAA SDSTGSNNNS NVQGTMGLMA PNPAEFFLWP NQSY

Arabidopsis Description

AIL6AINTEGUMENTA-like 6 [Source:UniProtKB/TrEMBL;Acc:F4KGW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.