CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72154	Canola	nucleus	78.4	77.2
CDY72251	Canola	nucleus	77.16	76.69
CDY57915	Canola	nucleus	95.06	54.61
AT3G20840.1	Thale cress	nucleus	92.28	52.09
CDY06387	Canola	nucleus	89.2	51.61
CDY19597	Canola	nucleus	90.43	49.83
CDY33356	Canola	nucleus	27.78	46.88
CDY29623	Canola	nucleus	78.7	45.37
CDY35571	Canola	nucleus	78.7	45.29
CDY18032	Canola	nucleus	39.2	43.79
VIT_06s0004g01800.t01	Wine grape	nucleus	68.52	40.36
Solyc11g061750.1.1	Tomato	nucleus	68.21	40.33
KRH24688	Soybean	nucleus	67.9	39.78
PGSC0003DMT400035354	Potato	nucleus	67.59	39.75
KRH29690	Soybean	nucleus	67.9	36.79
CDX72655	Canola	endoplasmic reticulum, golgi	37.65	36.53
CDY14577	Canola	nucleus	46.91	33.48
CDX82142	Canola	nucleus	46.91	33.26
CDX78387	Canola	nucleus	41.05	33.08
CDY49856	Canola	nucleus	46.3	32.82
CDX97022	Canola	nucleus	41.36	32.76
CDY08784	Canola	nucleus	47.84	30.33
CDX87360	Canola	nucleus	29.32	30.25
GSMUA_Achr2P05880_001	Banana	nucleus	53.09	30.07
CDX88560	Canola	nucleus	28.4	29.77
CDY42263	Canola	nucleus	49.38	29.14
CDY40102	Canola	nucleus	49.69	28.9
CDY55941	Canola	nucleus	49.69	28.85
CDX85454	Canola	nucleus	50.62	28.82
CDY35066	Canola	nucleus	29.01	28.48
CDY47943	Canola	nucleus	48.77	28.47
CDX69826	Canola	nucleus	48.46	28.04
CDX85757	Canola	nucleus	49.69	27.81
CDY68823	Canola	nucleus	28.09	26.84
CDX75673	Canola	nucleus	45.37	26.82
HORVU6Hr1G057060.3	Barley	nucleus	53.4	26.53
CDX69324	Canola	nucleus	45.06	26.31
TraesCS6A01G229500.1	Wheat	nucleus	53.4	26.25
TraesCS6B01G252000.1	Wheat	nucleus	53.4	26.13
CDY44027	Canola	nucleus	45.06	26.12
CDY50260	Canola	nucleus	45.06	26.07
Zm00001d017207_P001	Maize	nucleus	54.32	26.04
TraesCS6D01G205300.1	Wheat	nucleus	52.78	25.87
Os04t0504500-01	Rice	nucleus	52.16	25.68
KXG30667	Sorghum	nucleus	54.32	25.51
CDY16924	Canola	nucleus	29.63	25.4
TraesCS2D01G357600.1	Wheat	nucleus	51.23	25.34
TraesCS2B01G378100.1	Wheat	nucleus	51.54	25.3
HORVU2Hr1G087310.1	Barley	nucleus	51.23	25.19
CDX73488	Canola	nucleus	30.25	23.73
CDX78230	Canola	plastid	30.25	23.61
CDX67595	Canola	plastid	29.32	22.84
CDY71263	Canola	nucleus	19.75	19.63
Os02t0614300-01	Rice	mitochondrion, nucleus	16.05	16.2

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	GO:A0A078JTP6	UniProt:A0A078JTP6	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDY68782	ProteinID:CDY68782	ProteinID:CDY68782.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00077645001	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF22	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EDDA3E	SEG:seg	:	:	:

Description

BnaCnng60480DBnaCnng60480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTP6]

Coordinates

chrLK037963:-:153..1821

Molecular Weight (calculated)

36065.8 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.760

Length

324 amino acids

Sequence
(BLAST)

001: MNSNNWLGFP LPPNQSSLPP HEYNLGLVSD HMDNPFHTQE WNMINPHGGG EGGEVPKVAD FLGVSKPDEN QTDHLVAYND SDYYFHTNSL MPSVQSNDVV
101: VACDSNTPNN SYELQESAHN LQSLTLSMGT TGGNNAAAKA SPSEATGDNT SGGALAVVET ATPRRALDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR
201: EGQSRKGRQG TKLNLLLDIG GYDKEDKAAR SYDLAALKYW GPSTTTNFPI TNYEKEVEEM KHMTRQEFVA AIRRKSSGFS RGASMYRGVT RHHQHGRWQA
301: RIGRVAGNKD LYLGTFSKYF VILS

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.