Factsheet for TraesCS2D01G357600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G087310.1	Barley	nucleus	98.78	98.18
TraesCS2B01G378100.1	Wheat	nucleus	98.47	97.73
Os04t0504500-01	Rice	nucleus	72.52	72.19
Os02t0614300-01	Rice	mitochondrion, nucleus	32.67	66.67
Zm00001d017207_P001	Maize	nucleus	67.63	65.53
KXG30667	Sorghum	nucleus	68.24	64.78
TraesCS6D01G205300.1	Wheat	nucleus	64.27	63.69
CDY68782	Canola	nucleus	25.34	51.23
GSMUA_Achr2P05880_001	Banana	nucleus	43.97	50.35
CDY72251	Canola	nucleus	24.27	48.77
CDY72154	Canola	nucleus	24.12	48.02
TraesCS4D01G182100.1	Wheat	nucleus	27.33	47.61
TraesCS7D01G483200.1	Wheat	nucleus	31.6	44.14
VIT_06s0004g01800.t01	Wine grape	nucleus	36.64	43.64
Solyc11g061750.1.1	Tomato	nucleus	36.34	43.43
KRH24688	Soybean	nucleus	36.49	43.22
PGSC0003DMT400035354	Potato	nucleus	36.34	43.19
CDY06387	Canola	nucleus	36.03	42.14
CDY57915	Canola	nucleus	36.03	41.84
Bra031234.1-P	Field mustard	nucleus	35.57	41.83
AT3G20840.1	Thale cress	nucleus	36.34	41.46
AT1G51190.1	Thale cress	nucleus	35.42	40.85
CDY35571	Canola	nucleus	34.96	40.67
Bra030451.1-P	Field mustard	nucleus	34.96	40.6
Bra018899.1-P	Field mustard	nucleus	34.5	40.43
CDY29623	Canola	nucleus	34.66	40.39
TraesCS4D01G291300.1	Wheat	nucleus	32.37	40.3
CDY19597	Canola	nucleus	35.73	39.8
TraesCS2D01G506500.1	Wheat	nucleus	28.86	39.71
KRH29690	Soybean	nucleus	36.18	39.63
TraesCS3D01G389100.1	Wheat	nucleus	41.98	36.76
TraesCS2D01G256600.2	Wheat	nucleus	32.21	35.17
TraesCS5D01G415500.1	Wheat	nucleus	33.59	35.14
TraesCS5D01G229400.1	Wheat	nucleus	20.61	34.09
TraesCS4D01G237300.2	Wheat	nucleus	32.67	33.91
Bra023921.1-P	Field mustard	nucleus	23.51	32.98
TraesCS7D01G091100.1	Wheat	nucleus	20.46	32.68
TraesCS1D01G362500.1	Wheat	nucleus	20.31	32.36
TraesCS3D01G330400.1	Wheat	plastid	18.17	31.57
TraesCS4D01G131200.1	Wheat	plastid	16.64	30.7
TraesCS5D01G150500.1	Wheat	plastid	20.0	30.68

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467
PANTHER:PTHR32467:SF48	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2D01G357600	EnsemblPlants:TraesCS2D01G357600.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:459772490..459776352

Molecular Weight (calculated)

69380.8 Da

IEP (calculated)

6.437

GRAVY (calculated)

-0.563

Length

655 amino acids

Sequence
(BLAST)

001: MASANNWLGF SLSGQGNHPQ PHQNGSPAAA AIDGDFYGLQ GQTAPDAHLG MSGLRADANY GVMDAFNGGT QETQDWAMRG LDYHGGSSEL SMLVGSSGGR
101: MTVDDGEAPK LEDFLGGNSF SDVQDHAGSY LFSSGSAMGS GAASGSHGVD GRGGSTIELS MIKTWLRNDN NQAQHDQEMS ADASATSYAC SGAPGSTGNG
201: VGVASSRGQG LALSMSMGSN SHPQMPVVPA AVGTESTSSE NKRVDSPSAG TADAVQRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG
301: KQVYLGGYDK EDKAARAYDL AALKYWGTTT TTNIPISTYE KEIEEMKHMT RQEYIAYLRR NSSGFSRGAS KYRGVTRHHQ QGRWQARIGR VAGNKDLYLG
401: TFTTEEEAAE AYDIAAIKFR GLNAVTNFEM SRYDVKSILE GSTLPVGGAA RRLKEAAELA EAGVWRAEDG SIVSHLQADA MAGYHHGWPT SIAFGSHQQQ
501: QSAAQLALHY PYGVGGQARG WCKPEQDAVI AAGHGGQDMQ ELHLGSGGST HNFFQPASRT AVYGNGGGGA WYQGLGGNAY MMPVGTVVDA DQGHSGSTAT
601: TEEGRLVGYG AEAGVDPYAA MRRAYELSQG SSSVSVAKVA DGYSNNWSSP FNGMG

Best Arabidopsis Sequence Match ( AT5G17430.1 )
(BLAST)

001: MNSMNNWLGF SLSPHDQNHH RTDVDSSTTR TAVDVAGGYC FDLAAPSDES SAVQTSFLSP FGVTLEAFTR DNNSHSRDWD INGGACNNIN NNEQNGPKLE
101: NFLGRTTTIY NTNETVVDGN GDCGGGDGGG GGSLGLSMIK TWLSNHSVAN ANHQDNGNGA RGLSLSMNSS TSDSNNYNNN DDVVQEKTIV DVVETTPKKT
201: IESFGQRTSI YRGVTRHRWT GRYEAHLWDN SCKREGQTRK GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPLSEY EKEVEEMKHM TRQEYVASLR
301: RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGLSAVTNFD MNRYNVKAIL ESPSLPIGSS AKRLKDVNNP
401: VPAMMISNNV SESANNVSGW QNTAFQHHQG MDLSLLQQQQ ERYVGYYNGG NLSTESTRVC FKQEEEQQHF LRNSPSHMTN VDHHSSTSDD SVTVCGNVVS
501: YGGYQGFAIP VGTSVNYDPF TAAEIAYNAR NHYYYAQHQQ QQQIQQSPGG DFPVAISNNH SSNMYFHGEG GGEGAPTFSV WNDT

Arabidopsis Description

BBMBABY BOOM [Source:UniProtKB/TrEMBL;Acc:A7L9U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.